miRNA display CGI


Results 141 - 160 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6684 3' -59.2 NC_001847.1 + 86498 0.77 0.20249
Target:  5'- gGCUGcgGGGGCg---GCGGCGCCCCg -3'
miRNA:   3'- -CGACuaCUCCGgcuaCGUCGCGGGGg -5'
6684 3' -59.2 NC_001847.1 + 87686 0.69 0.570914
Target:  5'- gGCgc-UGGGGCUGcUGCGGCGCCgCg -3'
miRNA:   3'- -CGacuACUCCGGCuACGUCGCGGgGg -5'
6684 3' -59.2 NC_001847.1 + 88233 0.67 0.661586
Target:  5'- cGCcgGAgccGAGGCCGgcGCGGCGCggggCgCCg -3'
miRNA:   3'- -CGa-CUa--CUCCGGCuaCGUCGCG----GgGG- -5'
6684 3' -59.2 NC_001847.1 + 88779 0.7 0.492942
Target:  5'- uGCUGGUGuccGCCGA-GgAGC-CCCCCg -3'
miRNA:   3'- -CGACUACuc-CGGCUaCgUCGcGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 90187 0.66 0.750295
Target:  5'- -----cGGGGCUGcUGCGGCGCgCCg -3'
miRNA:   3'- cgacuaCUCCGGCuACGUCGCGgGGg -5'
6684 3' -59.2 NC_001847.1 + 90329 0.66 0.731064
Target:  5'- uGCcGAcUGGGGCgCGGUGCcGCGCUCg- -3'
miRNA:   3'- -CGaCU-ACUCCG-GCUACGuCGCGGGgg -5'
6684 3' -59.2 NC_001847.1 + 90409 0.68 0.631293
Target:  5'- uGCUuGUGgcGGGCCacGAgGCGGCGCCCUUc -3'
miRNA:   3'- -CGAcUAC--UCCGG--CUaCGUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 90491 0.68 0.601003
Target:  5'- --cGGUGcAGGCgGG-GCAGCaGCCUCCg -3'
miRNA:   3'- cgaCUAC-UCCGgCUaCGUCG-CGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 90831 0.66 0.769121
Target:  5'- --aGgcGGGGCgagaucagCGA-GCGGCGCCCCg -3'
miRNA:   3'- cgaCuaCUCCG--------GCUaCGUCGCGGGGg -5'
6684 3' -59.2 NC_001847.1 + 90869 0.72 0.423704
Target:  5'- gGCUGGUgucGAGGCCGggGCcguugcccagucgccGGCGCgcucagCCCCa -3'
miRNA:   3'- -CGACUA---CUCCGGCuaCG---------------UCGCG------GGGG- -5'
6684 3' -59.2 NC_001847.1 + 91674 0.67 0.691671
Target:  5'- gGCUGcgGcugcGGCUGcgGCuGCGgCUCCCg -3'
miRNA:   3'- -CGACuaCu---CCGGCuaCGuCGC-GGGGG- -5'
6684 3' -59.2 NC_001847.1 + 91724 0.7 0.483522
Target:  5'- cGCgacgcGAGGCCcagcUGCAGCGCCCUg -3'
miRNA:   3'- -CGacua-CUCCGGcu--ACGUCGCGGGGg -5'
6684 3' -59.2 NC_001847.1 + 92168 0.67 0.671649
Target:  5'- aGCgaacccGGGCCGGccgGCGGCccGCCCCCc -3'
miRNA:   3'- -CGacuac-UCCGGCUa--CGUCG--CGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 93070 0.68 0.621186
Target:  5'- -----cGAGGCCGAUGCGcCGCagcggcaccagCCCCa -3'
miRNA:   3'- cgacuaCUCCGGCUACGUcGCG-----------GGGG- -5'
6684 3' -59.2 NC_001847.1 + 93133 0.73 0.339092
Target:  5'- aGCUGGccGGGCUGc--CGGCGCCCCCc -3'
miRNA:   3'- -CGACUacUCCGGCuacGUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 93748 0.67 0.659571
Target:  5'- aGCUG--GAGGCCGcgcggcugccgGCGGCGgCCCg -3'
miRNA:   3'- -CGACuaCUCCGGCua---------CGUCGCgGGGg -5'
6684 3' -59.2 NC_001847.1 + 94755 0.66 0.759763
Target:  5'- cGCgucuu-GGCCGggGCcGuCGCCCCCc -3'
miRNA:   3'- -CGacuacuCCGGCuaCGuC-GCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 95360 0.66 0.759763
Target:  5'- aCUGGcgGGGGCUGGcgGCGgaccGCGCCgCCg -3'
miRNA:   3'- cGACUa-CUCCGGCUa-CGU----CGCGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 95540 0.66 0.731064
Target:  5'- cCUGGggcUGGGGCCGcgccgcaGCAGCGCUggggccaccuggCCCa -3'
miRNA:   3'- cGACU---ACUCCGGCua-----CGUCGCGG------------GGG- -5'
6684 3' -59.2 NC_001847.1 + 95708 0.72 0.403073
Target:  5'- cGCUGAUG-GGCUac-GCccacGCGCCCCCc -3'
miRNA:   3'- -CGACUACuCCGGcuaCGu---CGCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.