miRNA display CGI


Results 81 - 100 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6684 3' -59.2 NC_001847.1 + 90831 0.66 0.769121
Target:  5'- --aGgcGGGGCgagaucagCGA-GCGGCGCCCCg -3'
miRNA:   3'- cgaCuaCUCCG--------GCUaCGUCGCGGGGg -5'
6684 3' -59.2 NC_001847.1 + 90491 0.68 0.601003
Target:  5'- --cGGUGcAGGCgGG-GCAGCaGCCUCCg -3'
miRNA:   3'- cgaCUAC-UCCGgCUaCGUCG-CGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 90409 0.68 0.631293
Target:  5'- uGCUuGUGgcGGGCCacGAgGCGGCGCCCUUc -3'
miRNA:   3'- -CGAcUAC--UCCGG--CUaCGUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 90329 0.66 0.731064
Target:  5'- uGCcGAcUGGGGCgCGGUGCcGCGCUCg- -3'
miRNA:   3'- -CGaCU-ACUCCG-GCUACGuCGCGGGgg -5'
6684 3' -59.2 NC_001847.1 + 90187 0.66 0.750295
Target:  5'- -----cGGGGCUGcUGCGGCGCgCCg -3'
miRNA:   3'- cgacuaCUCCGGCuACGUCGCGgGGg -5'
6684 3' -59.2 NC_001847.1 + 88779 0.7 0.492942
Target:  5'- uGCUGGUGuccGCCGA-GgAGC-CCCCCg -3'
miRNA:   3'- -CGACUACuc-CGGCUaCgUCGcGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 88233 0.67 0.661586
Target:  5'- cGCcgGAgccGAGGCCGgcGCGGCGCggggCgCCg -3'
miRNA:   3'- -CGa-CUa--CUCCGGCuaCGUCGCG----GgGG- -5'
6684 3' -59.2 NC_001847.1 + 87686 0.69 0.570914
Target:  5'- gGCgc-UGGGGCUGcUGCGGCGCCgCg -3'
miRNA:   3'- -CGacuACUCCGGCuACGUCGCGGgGg -5'
6684 3' -59.2 NC_001847.1 + 86498 0.77 0.20249
Target:  5'- gGCUGcgGGGGCg---GCGGCGCCCCg -3'
miRNA:   3'- -CGACuaCUCCGgcuaCGUCGCGGGGg -5'
6684 3' -59.2 NC_001847.1 + 86300 0.66 0.729122
Target:  5'- cGCgccgcgcGGCCGA---GGCGCCCCCg -3'
miRNA:   3'- -CGacuacu-CCGGCUacgUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 86041 0.73 0.336841
Target:  5'- cGCUGGUugggcgaggcgcugGGGGCCacgGAUGCgAGCGUCCUCg -3'
miRNA:   3'- -CGACUA--------------CUCCGG---CUACG-UCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 85770 0.66 0.769121
Target:  5'- cGCcGggGGcagcGGCCGAUGCGGUGCgCgUCg -3'
miRNA:   3'- -CGaCuaCU----CCGGCUACGUCGCG-GgGG- -5'
6684 3' -59.2 NC_001847.1 + 85495 0.66 0.769121
Target:  5'- cGCgGAgaAGGCCGcUGUggucGGCGUCUCCa -3'
miRNA:   3'- -CGaCUacUCCGGCuACG----UCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 84854 0.68 0.648472
Target:  5'- aGCUGGUggaaguagucgugcGAGGCgaccgCGAUGCAGCuaGCUgCCa -3'
miRNA:   3'- -CGACUA--------------CUCCG-----GCUACGUCG--CGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 84308 0.68 0.598989
Target:  5'- aGCgccccccGGCgCGG-GCAGCGCCCCCc -3'
miRNA:   3'- -CGacuacu-CCG-GCUaCGUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 83594 0.7 0.502445
Target:  5'- cGCUGgcGAGcugcGCCGAcgccuggGCGcCGCCCCCg -3'
miRNA:   3'- -CGACuaCUC----CGGCUa------CGUcGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 82110 0.66 0.750295
Target:  5'- gGCUcgGAgccGAGGcCCGAgcgcGCAGCGgCCgCCg -3'
miRNA:   3'- -CGA--CUa--CUCC-GGCUa---CGUCGCgGG-GG- -5'
6684 3' -59.2 NC_001847.1 + 81858 0.71 0.447653
Target:  5'- aGCggcGUGAGGCgGAcgcgcgccugggcgcGCAGCGCCCCg -3'
miRNA:   3'- -CGac-UACUCCGgCUa--------------CGUCGCGGGGg -5'
6684 3' -59.2 NC_001847.1 + 81015 0.66 0.750295
Target:  5'- cGCggccacuUGcaGCCGGUGCuGCGCCuCCCg -3'
miRNA:   3'- -CGacu----ACucCGGCUACGuCGCGG-GGG- -5'
6684 3' -59.2 NC_001847.1 + 80865 0.67 0.711499
Target:  5'- cGCguc-GAGGCCGuccgGCAGCacGCCCgCg -3'
miRNA:   3'- -CGacuaCUCCGGCua--CGUCG--CGGGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.