miRNA display CGI


Results 101 - 120 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6684 3' -59.2 NC_001847.1 + 80730 0.71 0.42896
Target:  5'- gGCcGccGAGGCCaaccGcgGCGGCGCCCgCCu -3'
miRNA:   3'- -CGaCuaCUCCGG----CuaCGUCGCGGG-GG- -5'
6684 3' -59.2 NC_001847.1 + 80529 0.71 0.464948
Target:  5'- cGCUGAaaguagcGGGCgGAuUGCucgcccacGGCGCCCCCg -3'
miRNA:   3'- -CGACUac-----UCCGgCU-ACG--------UCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 79002 0.66 0.731064
Target:  5'- uGCUGAgccaccccgGAGGCUGc-GCGGCGUgCaCCg -3'
miRNA:   3'- -CGACUa--------CUCCGGCuaCGUCGCGgG-GG- -5'
6684 3' -59.2 NC_001847.1 + 78857 0.7 0.502445
Target:  5'- aGCUGGUGu-GCucgCGGUGC-GCGCCCUCg -3'
miRNA:   3'- -CGACUACucCG---GCUACGuCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 78341 0.68 0.611087
Target:  5'- gGCU--UGGGcGCCGcgGCGGCgaacaGCCCCUc -3'
miRNA:   3'- -CGAcuACUC-CGGCuaCGUCG-----CGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 76896 0.67 0.691671
Target:  5'- cCUGAcgGAGGgCGGUcGC-GCGCCgCCg -3'
miRNA:   3'- cGACUa-CUCCgGCUA-CGuCGCGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 76402 0.69 0.590942
Target:  5'- gGCgccgGGGGCCGcgGCgGGgGCaCCCCg -3'
miRNA:   3'- -CGacuaCUCCGGCuaCG-UCgCG-GGGG- -5'
6684 3' -59.2 NC_001847.1 + 75813 0.69 0.551055
Target:  5'- --cGAUGccGGGCUGGUaCGGCGCCgCCg -3'
miRNA:   3'- cgaCUAC--UCCGGCUAcGUCGCGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 75617 0.66 0.758821
Target:  5'- cCUGccAUGAGcgcagcgcaccaaGCCGGUGCggccucGGCGCaCCCCc -3'
miRNA:   3'- cGAC--UACUC-------------CGGCUACG------UCGCG-GGGG- -5'
6684 3' -59.2 NC_001847.1 + 74753 0.7 0.483522
Target:  5'- gGCUGGgagacGcGGUCGgcGC-GCGCCCCCu -3'
miRNA:   3'- -CGACUa----CuCCGGCuaCGuCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 74264 0.66 0.731064
Target:  5'- cGCUGcUGGGGCCcgcGCGcGCGCUCgCg -3'
miRNA:   3'- -CGACuACUCCGGcuaCGU-CGCGGGgG- -5'
6684 3' -59.2 NC_001847.1 + 74135 0.67 0.691671
Target:  5'- uGCUGcgcGUGGcGCCGGggcgaaugaugGCGGCGCCUCUc -3'
miRNA:   3'- -CGAC---UACUcCGGCUa----------CGUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 74103 0.67 0.661586
Target:  5'- cGCUGGUGc--CCGggGCGGCcGCgCCCg -3'
miRNA:   3'- -CGACUACuccGGCuaCGUCG-CGgGGG- -5'
6684 3' -59.2 NC_001847.1 + 73411 0.66 0.740726
Target:  5'- cGUUGcagGAucGGCUGAuUGCcgAGCGCCCUCu -3'
miRNA:   3'- -CGACua-CU--CCGGCU-ACG--UCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 73018 0.68 0.621186
Target:  5'- cGCgGAaccAGGCCGcgGCAGCGgCCgCg -3'
miRNA:   3'- -CGaCUac-UCCGGCuaCGUCGCgGGgG- -5'
6684 3' -59.2 NC_001847.1 + 72689 0.71 0.474189
Target:  5'- cCUGcUGAGGCCGGggagaGCGGCcGCCCg- -3'
miRNA:   3'- cGACuACUCCGGCUa----CGUCG-CGGGgg -5'
6684 3' -59.2 NC_001847.1 + 72609 0.66 0.769121
Target:  5'- cGCUGcu--GGCCGcacgGCAcGUGCCgCCCg -3'
miRNA:   3'- -CGACuacuCCGGCua--CGU-CGCGG-GGG- -5'
6684 3' -59.2 NC_001847.1 + 72183 0.67 0.660578
Target:  5'- cGCUGGUGcagucGGUCG-UGguGCcggaucuGCCCCCc -3'
miRNA:   3'- -CGACUACu----CCGGCuACguCG-------CGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 69882 0.68 0.638368
Target:  5'- cGCUGcgGAccGGCCGcggGCccggguggcggaaaAGCGCCgCCCc -3'
miRNA:   3'- -CGACuaCU--CCGGCua-CG--------------UCGCGG-GGG- -5'
6684 3' -59.2 NC_001847.1 + 68921 0.7 0.492942
Target:  5'- cGCUGAgguucggcgcgGcGGCCGcggGCuGCGCCUCCa -3'
miRNA:   3'- -CGACUa----------CuCCGGCua-CGuCGCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.