miRNA display CGI


Results 121 - 140 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6684 3' -59.2 NC_001847.1 + 68603 0.69 0.551055
Target:  5'- aGUUGGcuacGGCgCGGUcGCuGCGCCCCCa -3'
miRNA:   3'- -CGACUacu-CCG-GCUA-CGuCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 66978 0.67 0.711499
Target:  5'- cGCUGcaGAGGCgGGcUGCGGCGCggCgCCg -3'
miRNA:   3'- -CGACuaCUCCGgCU-ACGUCGCG--GgGG- -5'
6684 3' -59.2 NC_001847.1 + 66907 0.73 0.35749
Target:  5'- cGCUGAUGcaAGcgugcuugcggccccGCCGcgGCccguGCGCCCCCu -3'
miRNA:   3'- -CGACUAC--UC---------------CGGCuaCGu---CGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 66244 0.67 0.701613
Target:  5'- gGCUGcacucuccGGGCCGAgcaugcucGCGGCGaCUCCCg -3'
miRNA:   3'- -CGACuac-----UCCGGCUa-------CGUCGC-GGGGG- -5'
6684 3' -59.2 NC_001847.1 + 66165 0.68 0.621186
Target:  5'- cGCUGucucccGGGCUGgcGcCGGcCGCCCCCu -3'
miRNA:   3'- -CGACuac---UCCGGCuaC-GUC-GCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 60080 0.67 0.661586
Target:  5'- cGCUaGUGAuGGCCGuguucguggGCAGC-CUCCCg -3'
miRNA:   3'- -CGAcUACU-CCGGCua-------CGUCGcGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 59058 0.68 0.611087
Target:  5'- uGgUGGUGAGGCgGcagcucgGCuggcGCGCCCUCg -3'
miRNA:   3'- -CgACUACUCCGgCua-----CGu---CGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 58735 0.69 0.551055
Target:  5'- cGCggGGUGcccccGCCGcgGCccccGGCGCCCCCc -3'
miRNA:   3'- -CGa-CUACuc---CGGCuaCG----UCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 58534 0.66 0.769121
Target:  5'- --cGAaGAGGCCGccGCGGUcuucGCCgCCg -3'
miRNA:   3'- cgaCUaCUCCGGCuaCGUCG----CGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 57272 0.71 0.447653
Target:  5'- cGCUGuucaaaaacucccGGGCCGAg--AGCGCCCCCa -3'
miRNA:   3'- -CGACuac----------UCCGGCUacgUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 56916 0.68 0.650491
Target:  5'- gGCgGGUGAcuaccgugagcucGGCCGAguuUGCGGCGCUgCa -3'
miRNA:   3'- -CGaCUACU-------------CCGGCU---ACGUCGCGGgGg -5'
6684 3' -59.2 NC_001847.1 + 56791 0.66 0.769121
Target:  5'- cGCUcGA-GGGGCUGuucgccgccGCGGCGCCCaagCCg -3'
miRNA:   3'- -CGA-CUaCUCCGGCua-------CGUCGCGGG---GG- -5'
6684 3' -59.2 NC_001847.1 + 55572 0.74 0.317075
Target:  5'- --cGAaGAGGCCGcgaGCccGGCGCCCCCc -3'
miRNA:   3'- cgaCUaCUCCGGCua-CG--UCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 54664 0.67 0.661586
Target:  5'- cGCUGcgGAacggggagcgcGGCCcgacggcgGcgGCGGCGCCCgCg -3'
miRNA:   3'- -CGACuaCU-----------CCGG--------CuaCGUCGCGGGgG- -5'
6684 3' -59.2 NC_001847.1 + 54057 0.68 0.631293
Target:  5'- cGC-GgcGAGGCCGccGcCAGCGCCgUCg -3'
miRNA:   3'- -CGaCuaCUCCGGCuaC-GUCGCGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 53864 0.67 0.661586
Target:  5'- cGCUGgcGGcGCCGAccgccgcggggGCGGCggGCCCCCc -3'
miRNA:   3'- -CGACuaCUcCGGCUa----------CGUCG--CGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 53225 0.67 0.661586
Target:  5'- aGCUGAacgcccucaUGGuGcGCUGGcUGCGGCGCCgCCu -3'
miRNA:   3'- -CGACU---------ACU-C-CGGCU-ACGUCGCGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 52591 0.72 0.394667
Target:  5'- gGCgGccGAGGCCGAgcccgcggGCGGCGCCUUUg -3'
miRNA:   3'- -CGaCuaCUCCGGCUa-------CGUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 52119 0.68 0.601003
Target:  5'- aGCgGccGcGGGCCG--GCGGCGCCCCa -3'
miRNA:   3'- -CGaCuaC-UCCGGCuaCGUCGCGGGGg -5'
6684 3' -59.2 NC_001847.1 + 51516 0.68 0.651501
Target:  5'- cGCcGGUGcggcgccggcAGGCgGggGCGGCGCCCa- -3'
miRNA:   3'- -CGaCUAC----------UCCGgCuaCGUCGCGGGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.