miRNA display CGI


Results 61 - 80 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6684 3' -59.2 NC_001847.1 + 6962 0.71 0.446752
Target:  5'- -----cGGGGUCGcgGCGGCGCUUCCg -3'
miRNA:   3'- cgacuaCUCCGGCuaCGUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 34642 0.71 0.446752
Target:  5'- cGCgcc-GAGGCCGA-GCGGCGCgCCg -3'
miRNA:   3'- -CGacuaCUCCGGCUaCGUCGCGgGGg -5'
6684 3' -59.2 NC_001847.1 + 132835 0.69 0.541203
Target:  5'- cGCgUGcUGGGGCCcAUGCcgcccGGCGgCCCCg -3'
miRNA:   3'- -CG-ACuACUCCGGcUACG-----UCGCgGGGG- -5'
6684 3' -59.2 NC_001847.1 + 132210 0.69 0.541203
Target:  5'- cGCUGGaGGcGGCCGcgcugGCGGCGCggaccguggCCCCg -3'
miRNA:   3'- -CGACUaCU-CCGGCua---CGUCGCG---------GGGG- -5'
6684 3' -59.2 NC_001847.1 + 6758 0.69 0.551055
Target:  5'- uGC-GGUGcGGCCGGUGCgaGGCGCCagcugcUCCg -3'
miRNA:   3'- -CGaCUACuCCGGCUACG--UCGCGG------GGG- -5'
6684 3' -59.2 NC_001847.1 + 36663 0.69 0.551055
Target:  5'- cGCaGGUGGGGgcuUCGAUGC-GC-CCCCCg -3'
miRNA:   3'- -CGaCUACUCC---GGCUACGuCGcGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 68603 0.69 0.551055
Target:  5'- aGUUGGcuacGGCgCGGUcGCuGCGCCCCCa -3'
miRNA:   3'- -CGACUacu-CCG-GCUA-CGuCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 2459 0.69 0.560961
Target:  5'- aGCUcccGAUcGA-GCgGGcgGCGGCGCCCCCg -3'
miRNA:   3'- -CGA---CUA-CUcCGgCUa-CGUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 87686 0.69 0.570914
Target:  5'- gGCgc-UGGGGCUGcUGCGGCGCCgCg -3'
miRNA:   3'- -CGacuACUCCGGCuACGUCGCGGgGg -5'
6684 3' -59.2 NC_001847.1 + 120189 0.69 0.58091
Target:  5'- uGgUGGUGcuGGCCGcgcgaGCGGCGCCCgCu -3'
miRNA:   3'- -CgACUACu-CCGGCua---CGUCGCGGGgG- -5'
6684 3' -59.2 NC_001847.1 + 83594 0.7 0.502445
Target:  5'- cGCUGgcGAGcugcGCCGAcgccuggGCGcCGCCCCCg -3'
miRNA:   3'- -CGACuaCUC----CGGCUa------CGUcGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 127704 0.7 0.502445
Target:  5'- --gGGUGcGGGCCGcUGCAaguaCGCCCCCc -3'
miRNA:   3'- cgaCUAC-UCCGGCuACGUc---GCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 80529 0.71 0.464948
Target:  5'- cGCUGAaaguagcGGGCgGAuUGCucgcccacGGCGCCCCCg -3'
miRNA:   3'- -CGACUac-----UCCGgCU-ACG--------UCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 131066 0.71 0.472333
Target:  5'- cGCUGAggccgaggccgaggcUGAGGCCGGgacugggGCcgggaccagaaccaaAGCGgCCCCg -3'
miRNA:   3'- -CGACU---------------ACUCCGGCUa------CG---------------UCGCgGGGG- -5'
6684 3' -59.2 NC_001847.1 + 32530 0.7 0.483522
Target:  5'- gGCUGucgGAGG-CGAUGCGcGCGCagCCCu -3'
miRNA:   3'- -CGACua-CUCCgGCUACGU-CGCGg-GGG- -5'
6684 3' -59.2 NC_001847.1 + 74753 0.7 0.483522
Target:  5'- gGCUGGgagacGcGGUCGgcGC-GCGCCCCCu -3'
miRNA:   3'- -CGACUa----CuCCGGCuaCGuCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 91724 0.7 0.483522
Target:  5'- cGCgacgcGAGGCCcagcUGCAGCGCCCUg -3'
miRNA:   3'- -CGacua-CUCCGGcu--ACGUCGCGGGGg -5'
6684 3' -59.2 NC_001847.1 + 135025 0.7 0.483522
Target:  5'- cGCgGgcGGGGCCGggGCgcggGGCGCCggaCCCa -3'
miRNA:   3'- -CGaCuaCUCCGGCuaCG----UCGCGG---GGG- -5'
6684 3' -59.2 NC_001847.1 + 11207 0.7 0.492942
Target:  5'- gGCUGGUcGAGGuuGAaGUGGgGCCUCUg -3'
miRNA:   3'- -CGACUA-CUCCggCUaCGUCgCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 88779 0.7 0.492942
Target:  5'- uGCUGGUGuccGCCGA-GgAGC-CCCCCg -3'
miRNA:   3'- -CGACUACuc-CGGCUaCgUCGcGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.