miRNA display CGI


Results 81 - 100 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6684 3' -59.2 NC_001847.1 + 76402 0.69 0.590942
Target:  5'- gGCgccgGGGGCCGcgGCgGGgGCaCCCCg -3'
miRNA:   3'- -CGacuaCUCCGGCuaCG-UCgCG-GGGG- -5'
6684 3' -59.2 NC_001847.1 + 105572 0.69 0.590942
Target:  5'- cGCgGcgGc-GCCGgcGcCGGCGCCCCCg -3'
miRNA:   3'- -CGaCuaCucCGGCuaC-GUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 84308 0.68 0.598989
Target:  5'- aGCgccccccGGCgCGG-GCAGCGCCCCCc -3'
miRNA:   3'- -CGacuacu-CCG-GCUaCGUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 107683 0.68 0.601003
Target:  5'- --gGggGGGGCggCGGgcagcgGCAGgGCCCCCg -3'
miRNA:   3'- cgaCuaCUCCG--GCUa-----CGUCgCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 124392 0.68 0.601003
Target:  5'- gGCggGAgagGGGGCCGcgggGCccCGCCCCCc -3'
miRNA:   3'- -CGa-CUa--CUCCGGCua--CGucGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 24994 0.68 0.607051
Target:  5'- uGUUGAUGGccauGGCCaucGAguccagcagcuuCAGCGCCCCCa -3'
miRNA:   3'- -CGACUACU----CCGG---CUac----------GUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 59058 0.68 0.611087
Target:  5'- uGgUGGUGAGGCgGcagcucgGCuggcGCGCCCUCg -3'
miRNA:   3'- -CgACUACUCCGgCua-----CGu---CGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 120189 0.69 0.58091
Target:  5'- uGgUGGUGcuGGCCGcgcgaGCGGCGCCCgCu -3'
miRNA:   3'- -CgACUACu-CCGGCua---CGUCGCGGGgG- -5'
6684 3' -59.2 NC_001847.1 + 87686 0.69 0.570914
Target:  5'- gGCgc-UGGGGCUGcUGCGGCGCCgCg -3'
miRNA:   3'- -CGacuACUCCGGCuACGUCGCGGgGg -5'
6684 3' -59.2 NC_001847.1 + 2459 0.69 0.560961
Target:  5'- aGCUcccGAUcGA-GCgGGcgGCGGCGCCCCCg -3'
miRNA:   3'- -CGA---CUA-CUcCGgCUa-CGUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 11207 0.7 0.492942
Target:  5'- gGCUGGUcGAGGuuGAaGUGGgGCCUCUg -3'
miRNA:   3'- -CGACUA-CUCCggCUaCGUCgCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 88779 0.7 0.492942
Target:  5'- uGCUGGUGuccGCCGA-GgAGC-CCCCCg -3'
miRNA:   3'- -CGACUACuc-CGGCUaCgUCGcGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 127704 0.7 0.502445
Target:  5'- --gGGUGcGGGCCGcUGCAaguaCGCCCCCc -3'
miRNA:   3'- cgaCUAC-UCCGGCuACGUc---GCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 83594 0.7 0.502445
Target:  5'- cGCUGgcGAGcugcGCCGAcgccuggGCGcCGCCCCCg -3'
miRNA:   3'- -CGACuaCUC----CGGCUa------CGUcGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 132835 0.69 0.541203
Target:  5'- cGCgUGcUGGGGCCcAUGCcgcccGGCGgCCCCg -3'
miRNA:   3'- -CG-ACuACUCCGGcUACG-----UCGCgGGGG- -5'
6684 3' -59.2 NC_001847.1 + 132210 0.69 0.541203
Target:  5'- cGCUGGaGGcGGCCGcgcugGCGGCGCggaccguggCCCCg -3'
miRNA:   3'- -CGACUaCU-CCGGCua---CGUCGCG---------GGGG- -5'
6684 3' -59.2 NC_001847.1 + 6758 0.69 0.551055
Target:  5'- uGC-GGUGcGGCCGGUGCgaGGCGCCagcugcUCCg -3'
miRNA:   3'- -CGaCUACuCCGGCUACG--UCGCGG------GGG- -5'
6684 3' -59.2 NC_001847.1 + 36663 0.69 0.551055
Target:  5'- cGCaGGUGGGGgcuUCGAUGC-GC-CCCCCg -3'
miRNA:   3'- -CGaCUACUCC---GGCUACGuCGcGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 68603 0.69 0.551055
Target:  5'- aGUUGGcuacGGCgCGGUcGCuGCGCCCCCa -3'
miRNA:   3'- -CGACUacu-CCG-GCUA-CGuCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 124773 0.68 0.611087
Target:  5'- gGCaccgGggGGGGCUuucgGCGGCgGCCCCCu -3'
miRNA:   3'- -CGa---CuaCUCCGGcua-CGUCG-CGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.