miRNA display CGI


Results 101 - 120 of 229 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6684 3' -59.2 NC_001847.1 + 54057 0.68 0.631293
Target:  5'- cGC-GgcGAGGCCGccGcCAGCGCCgUCg -3'
miRNA:   3'- -CGaCuaCUCCGGCuaC-GUCGCGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 90409 0.68 0.631293
Target:  5'- uGCUuGUGgcGGGCCacGAgGCGGCGCCCUUc -3'
miRNA:   3'- -CGAcUAC--UCCGG--CUaCGUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 42719 0.68 0.631293
Target:  5'- aUUGAUGcuuaccGGCgCGAguucggGCuGGCGCCCCCc -3'
miRNA:   3'- cGACUACu-----CCG-GCUa-----CG-UCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 34495 0.68 0.645441
Target:  5'- gGCgagGAUgcgagcGAGGCCGAcGCGgacggcgccggcgauGCGCCgCCCg -3'
miRNA:   3'- -CGa--CUA------CUCCGGCUaCGU---------------CGCGG-GGG- -5'
6684 3' -59.2 NC_001847.1 + 84854 0.68 0.648472
Target:  5'- aGCUGGUggaaguagucgugcGAGGCgaccgCGAUGCAGCuaGCUgCCa -3'
miRNA:   3'- -CGACUA--------------CUCCG-----GCUACGUCG--CGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 107683 0.68 0.601003
Target:  5'- --gGggGGGGCggCGGgcagcgGCAGgGCCCCCg -3'
miRNA:   3'- cgaCuaCUCCG--GCUa-----CGUCgCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 84308 0.68 0.598989
Target:  5'- aGCgccccccGGCgCGG-GCAGCGCCCCCc -3'
miRNA:   3'- -CGacuacu-CCG-GCUaCGUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 132835 0.69 0.541203
Target:  5'- cGCgUGcUGGGGCCcAUGCcgcccGGCGgCCCCg -3'
miRNA:   3'- -CG-ACuACUCCGGcUACG-----UCGCgGGGG- -5'
6684 3' -59.2 NC_001847.1 + 132210 0.69 0.541203
Target:  5'- cGCUGGaGGcGGCCGcgcugGCGGCGCggaccguggCCCCg -3'
miRNA:   3'- -CGACUaCU-CCGGCua---CGUCGCG---------GGGG- -5'
6684 3' -59.2 NC_001847.1 + 6758 0.69 0.551055
Target:  5'- uGC-GGUGcGGCCGGUGCgaGGCGCCagcugcUCCg -3'
miRNA:   3'- -CGaCUACuCCGGCUACG--UCGCGG------GGG- -5'
6684 3' -59.2 NC_001847.1 + 36663 0.69 0.551055
Target:  5'- cGCaGGUGGGGgcuUCGAUGC-GC-CCCCCg -3'
miRNA:   3'- -CGaCUACUCC---GGCUACGuCGcGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 68603 0.69 0.551055
Target:  5'- aGUUGGcuacGGCgCGGUcGCuGCGCCCCCa -3'
miRNA:   3'- -CGACUacu-CCG-GCUA-CGuCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 2459 0.69 0.560961
Target:  5'- aGCUcccGAUcGA-GCgGGcgGCGGCGCCCCCg -3'
miRNA:   3'- -CGA---CUA-CUcCGgCUa-CGUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 87686 0.69 0.570914
Target:  5'- gGCgc-UGGGGCUGcUGCGGCGCCgCg -3'
miRNA:   3'- -CGacuACUCCGGCuACGUCGCGGgGg -5'
6684 3' -59.2 NC_001847.1 + 120189 0.69 0.58091
Target:  5'- uGgUGGUGcuGGCCGcgcgaGCGGCGCCCgCu -3'
miRNA:   3'- -CgACUACu-CCGGCua---CGUCGCGGGgG- -5'
6684 3' -59.2 NC_001847.1 + 18511 0.69 0.590942
Target:  5'- gGCUGccGAGGCCagcgcUGCGggcGCGCCgCCg -3'
miRNA:   3'- -CGACuaCUCCGGcu---ACGU---CGCGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 48624 0.69 0.590942
Target:  5'- uGCcGAUGugaacGCCGcgGCGGCggggcgccgccGCCCCCg -3'
miRNA:   3'- -CGaCUACuc---CGGCuaCGUCG-----------CGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 117269 0.69 0.590942
Target:  5'- uCUGcgGGGccGCCGuuuUGgGGCGCCCCg -3'
miRNA:   3'- cGACuaCUC--CGGCu--ACgUCGCGGGGg -5'
6684 3' -59.2 NC_001847.1 + 76402 0.69 0.590942
Target:  5'- gGCgccgGGGGCCGcgGCgGGgGCaCCCCg -3'
miRNA:   3'- -CGacuaCUCCGGCuaCG-UCgCG-GGGG- -5'
6684 3' -59.2 NC_001847.1 + 105572 0.69 0.590942
Target:  5'- cGCgGcgGc-GCCGgcGcCGGCGCCCCCg -3'
miRNA:   3'- -CGaCuaCucCGGCuaC-GUCGCGGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.