miRNA display CGI


Results 81 - 100 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6684 3' -59.2 NC_001847.1 + 51516 0.68 0.651501
Target:  5'- cGCcGGUGcggcgccggcAGGCgGggGCGGCGCCCa- -3'
miRNA:   3'- -CGaCUAC----------UCCGgCuaCGUCGCGGGgg -5'
6684 3' -59.2 NC_001847.1 + 13862 0.68 0.631293
Target:  5'- cGCUGAUGGuGGCgaGggGgGGCGCCUUUg -3'
miRNA:   3'- -CGACUACU-CCGg-CuaCgUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 44950 0.68 0.621186
Target:  5'- gGCUGGgcGAcGGCgCGccGCAGCaGCCCCg -3'
miRNA:   3'- -CGACUa-CU-CCG-GCuaCGUCG-CGGGGg -5'
6684 3' -59.2 NC_001847.1 + 90491 0.68 0.601003
Target:  5'- --cGGUGcAGGCgGG-GCAGCaGCCUCCg -3'
miRNA:   3'- cgaCUAC-UCCGgCUaCGUCG-CGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 4870 0.68 0.601003
Target:  5'- --gGggGGGGCggCGGgcagcgGCAGgGCCCCCg -3'
miRNA:   3'- cgaCuaCUCCG--GCUa-----CGUCgCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 37059 0.69 0.569917
Target:  5'- gGCUGggGGcGGCUGGUGCAcGCgguacugGCCCgCCu -3'
miRNA:   3'- -CGACuaCU-CCGGCUACGU-CG-------CGGG-GG- -5'
6684 3' -59.2 NC_001847.1 + 75813 0.69 0.551055
Target:  5'- --cGAUGccGGGCUGGUaCGGCGCCgCCg -3'
miRNA:   3'- cgaCUAC--UCCGGCUAcGUCGCGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 66978 0.67 0.711499
Target:  5'- cGCUGcaGAGGCgGGcUGCGGCGCggCgCCg -3'
miRNA:   3'- -CGACuaCUCCGgCU-ACGUCGCG--GgGG- -5'
6684 3' -59.2 NC_001847.1 + 113584 0.67 0.715435
Target:  5'- aGCgGAUGAGGCucacgcacacgCGAUGUgccagcuugGGCgcguuggcccgcgcgGCCCCCg -3'
miRNA:   3'- -CGaCUACUCCG-----------GCUACG---------UCG---------------CGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 50310 0.66 0.731064
Target:  5'- aGCUGcggGGGGuuGugcgcacGCAG-GCCCCCc -3'
miRNA:   3'- -CGACua-CUCCggCua-----CGUCgCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 32212 0.7 0.483522
Target:  5'- cGCgGgcGGGGCCGggGCgcggGGCGCCggaCCCa -3'
miRNA:   3'- -CGaCuaCUCCGGCuaCG----UCGCGG---GGG- -5'
6684 3' -59.2 NC_001847.1 + 17561 0.71 0.437804
Target:  5'- cGCaGAcGuuuuGGCCGG-GCAGCGCgCCCCc -3'
miRNA:   3'- -CGaCUaCu---CCGGCUaCGUCGCG-GGGG- -5'
6684 3' -59.2 NC_001847.1 + 118452 0.72 0.420222
Target:  5'- uGCUGGUGGcGGCCucgugccUGCGGCGCaaggCCCg -3'
miRNA:   3'- -CGACUACU-CCGGcu-----ACGUCGCGg---GGG- -5'
6684 3' -59.2 NC_001847.1 + 66907 0.73 0.35749
Target:  5'- cGCUGAUGcaAGcgugcuugcggccccGCCGcgGCccguGCGCCCCCu -3'
miRNA:   3'- -CGACUAC--UC---------------CGGCuaCGu---CGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 28079 0.74 0.30998
Target:  5'- aGCgggGAcUGAGGCgGGgggcgGCGGUGCCCUCg -3'
miRNA:   3'- -CGa--CU-ACUCCGgCUa----CGUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 4006 0.66 0.759763
Target:  5'- --cGcgGGGcGCCGGgccCGGCGCCCgCCu -3'
miRNA:   3'- cgaCuaCUC-CGGCUac-GUCGCGGG-GG- -5'
6684 3' -59.2 NC_001847.1 + 23969 0.66 0.759763
Target:  5'- cGUUGGUGguugccauGGGCCGGcuUGGCGCCaguCCCa -3'
miRNA:   3'- -CGACUAC--------UCCGGCUacGUCGCGG---GGG- -5'
6684 3' -59.2 NC_001847.1 + 23189 0.66 0.750295
Target:  5'- gGCUGggGuGGGCUGGgcuaaccuUGCGGCagGUCCCUa -3'
miRNA:   3'- -CGACuaC-UCCGGCU--------ACGUCG--CGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 12558 0.66 0.749343
Target:  5'- cGCaGGUGcgcaacgGGcGCCGcguacGCGGCGCCCUCg -3'
miRNA:   3'- -CGaCUAC-------UC-CGGCua---CGUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 28315 0.66 0.740726
Target:  5'- cGCgaGAggcGGGcGCCGGgccCGGCGCCCCg -3'
miRNA:   3'- -CGa-CUa--CUC-CGGCUac-GUCGCGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.