miRNA display CGI


Results 101 - 120 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6684 3' -59.2 NC_001847.1 + 23189 0.66 0.750295
Target:  5'- gGCUGggGuGGGCUGGgcuaaccuUGCGGCagGUCCCUa -3'
miRNA:   3'- -CGACuaC-UCCGGCU--------ACGUCG--CGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 66978 0.67 0.711499
Target:  5'- cGCUGcaGAGGCgGGcUGCGGCGCggCgCCg -3'
miRNA:   3'- -CGACuaCUCCGgCU-ACGUCGCG--GgGG- -5'
6684 3' -59.2 NC_001847.1 + 114159 0.67 0.691671
Target:  5'- uGCcGAUuggGAGGCCuaGUGCGcGCGCCCgCu -3'
miRNA:   3'- -CGaCUA---CUCCGGc-UACGU-CGCGGGgG- -5'
6684 3' -59.2 NC_001847.1 + 51247 0.67 0.668633
Target:  5'- cGCUGcc--GGCCGAugaaagugacgagaUGCAGCGCCgCg -3'
miRNA:   3'- -CGACuacuCCGGCU--------------ACGUCGCGGgGg -5'
6684 3' -59.2 NC_001847.1 + 126782 0.66 0.759763
Target:  5'- cGUUGGUGguugccauGGGCCGGcuUGGCGCCaguCCCa -3'
miRNA:   3'- -CGACUAC--------UCCGGCUacGUCGCGG---GGG- -5'
6684 3' -59.2 NC_001847.1 + 107133 0.66 0.759763
Target:  5'- gGCU-AUGAcGGCCGcuucggccGCGGcCGCCUCCg -3'
miRNA:   3'- -CGAcUACU-CCGGCua------CGUC-GCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 37951 0.66 0.759763
Target:  5'- cGCUGAUcgcGAGcaaGCCGcuacGCAGCGCgCCg -3'
miRNA:   3'- -CGACUA---CUC---CGGCua--CGUCGCGgGGg -5'
6684 3' -59.2 NC_001847.1 + 106819 0.66 0.759763
Target:  5'- --cGcgGGGcGCCGGgccCGGCGCCCgCCu -3'
miRNA:   3'- cgaCuaCUC-CGGCUac-GUCGCGGG-GG- -5'
6684 3' -59.2 NC_001847.1 + 127164 0.68 0.651501
Target:  5'- uGgaGggGGGGcCCGA-GCAGgGCCCUa -3'
miRNA:   3'- -CgaCuaCUCC-GGCUaCGUCgCGGGGg -5'
6684 3' -59.2 NC_001847.1 + 42452 0.66 0.759763
Target:  5'- cGCUcGUG-GGCagagGGUGCGuuccGCGCCCCg -3'
miRNA:   3'- -CGAcUACuCCGg---CUACGU----CGCGGGGg -5'
6684 3' -59.2 NC_001847.1 + 56791 0.66 0.769121
Target:  5'- cGCUcGA-GGGGCUGuucgccgccGCGGCGCCCaagCCg -3'
miRNA:   3'- -CGA-CUaCUCCGGCua-------CGUCGCGGG---GG- -5'
6684 3' -59.2 NC_001847.1 + 83594 0.7 0.502445
Target:  5'- cGCUGgcGAGcugcGCCGAcgccuggGCGcCGCCCCCg -3'
miRNA:   3'- -CGACuaCUC----CGGCUa------CGUcGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 127704 0.7 0.502445
Target:  5'- --gGGUGcGGGCCGcUGCAaguaCGCCCCCc -3'
miRNA:   3'- cgaCUAC-UCCGGCuACGUc---GCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 88779 0.7 0.492942
Target:  5'- uGCUGGUGuccGCCGA-GgAGC-CCCCCg -3'
miRNA:   3'- -CGACUACuc-CGGCUaCgUCGcGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 34495 0.68 0.645441
Target:  5'- gGCgagGAUgcgagcGAGGCCGAcGCGgacggcgccggcgauGCGCCgCCCg -3'
miRNA:   3'- -CGa--CUA------CUCCGGCUaCGU---------------CGCGG-GGG- -5'
6684 3' -59.2 NC_001847.1 + 84854 0.68 0.648472
Target:  5'- aGCUGGUggaaguagucgugcGAGGCgaccgCGAUGCAGCuaGCUgCCa -3'
miRNA:   3'- -CGACUA--------------CUCCG-----GCUACGUCG--CGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 33213 0.68 0.648472
Target:  5'- cGCgGGUGGcucggcuuggcgccGcGCCGGgcgccGCGGCGCCUCCg -3'
miRNA:   3'- -CGaCUACU--------------C-CGGCUa----CGUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 124997 0.68 0.651501
Target:  5'- uGCUcgGgcGAGaGCUGcaGCAGCGCCuCCCa -3'
miRNA:   3'- -CGA--CuaCUC-CGGCuaCGUCGCGG-GGG- -5'
6684 3' -59.2 NC_001847.1 + 56916 0.68 0.650491
Target:  5'- gGCgGGUGAcuaccgugagcucGGCCGAguuUGCGGCGCUgCa -3'
miRNA:   3'- -CGaCUACU-------------CCGGCU---ACGUCGCGGgGg -5'
6684 3' -59.2 NC_001847.1 + 95708 0.72 0.403073
Target:  5'- cGCUGAUG-GGCUac-GCccacGCGCCCCCc -3'
miRNA:   3'- -CGACUACuCCGGcuaCGu---CGCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.