miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6684 5' -55 NC_001847.1 + 76617 0.68 0.856963
Target:  5'- aCCGcGgcGGcCUCU-UCGUGUCCcugCCCg -3'
miRNA:   3'- -GGC-CuuCC-GAGGuAGCACAGGua-GGG- -5'
6684 5' -55 NC_001847.1 + 63694 0.68 0.864589
Target:  5'- cCCGGAAGcGC-CCggggccaaccucGUCGUGUgCAcccUCCCc -3'
miRNA:   3'- -GGCCUUC-CGaGG------------UAGCACAgGU---AGGG- -5'
6684 5' -55 NC_001847.1 + 105255 0.68 0.849133
Target:  5'- gCCGGcAGGGCcgCCGccUCGccGUCCccGUCCCc -3'
miRNA:   3'- -GGCC-UUCCGa-GGU--AGCa-CAGG--UAGGG- -5'
6684 5' -55 NC_001847.1 + 55563 0.67 0.917684
Target:  5'- cCCGGAcGGCgCCcgcagcacgAUCGUGUUugCAUCCa -3'
miRNA:   3'- -GGCCUuCCGaGG---------UAGCACAG--GUAGGg -5'
6684 5' -55 NC_001847.1 + 82 0.67 0.917684
Target:  5'- cCCGGGcccgcucuGGGCUCCGccccuggGUCCGgcgCCCc -3'
miRNA:   3'- -GGCCU--------UCCGAGGUagca---CAGGUa--GGG- -5'
6684 5' -55 NC_001847.1 + 26396 0.67 0.905787
Target:  5'- gCGGGcGGGC-CCGUCGUccgccGcCCAUCCg -3'
miRNA:   3'- gGCCU-UCCGaGGUAGCA-----CaGGUAGGg -5'
6684 5' -55 NC_001847.1 + 61554 0.67 0.900127
Target:  5'- gCCGGggGGCUgCuugaacugcagcucCGUGUCCGacgugcUCCg -3'
miRNA:   3'- -GGCCuuCCGAgGua------------GCACAGGU------AGGg -5'
6684 5' -55 NC_001847.1 + 19041 0.67 0.892954
Target:  5'- gCCGGcAGGC-CCggCGUcGUCaucguCGUCCCa -3'
miRNA:   3'- -GGCCuUCCGaGGuaGCA-CAG-----GUAGGG- -5'
6684 5' -55 NC_001847.1 + 102895 0.67 0.917684
Target:  5'- cCCGGGcccgcucuGGGCUCCGccccuggGUCCGgcgCCCc -3'
miRNA:   3'- -GGCCU--------UCCGAGGUagca---CAGGUa--GGG- -5'
6684 5' -55 NC_001847.1 + 60995 0.67 0.911257
Target:  5'- aCGGcgccgucGAGGCcgCCAUCGgcgccgcgcGUCaCAUCCCc -3'
miRNA:   3'- gGCC-------UUCCGa-GGUAGCa--------CAG-GUAGGG- -5'
6684 5' -55 NC_001847.1 + 55285 0.67 0.905167
Target:  5'- cCCGGAcGGGCggcaGUCGUGUCCcagcggcGUCUa -3'
miRNA:   3'- -GGCCU-UCCGagg-UAGCACAGG-------UAGGg -5'
6684 5' -55 NC_001847.1 + 129209 0.67 0.905787
Target:  5'- gCGGGcGGGC-CCGUCGUccgccGcCCAUCCg -3'
miRNA:   3'- gGCCU-UCCGaGGUAGCA-----CaGGUAGGg -5'
6684 5' -55 NC_001847.1 + 120260 0.67 0.905787
Target:  5'- gCGGAcGGCcCCGuagcguUCGcUGUCCA-CCCg -3'
miRNA:   3'- gGCCUuCCGaGGU------AGC-ACAGGUaGGG- -5'
6684 5' -55 NC_001847.1 + 2620 0.67 0.911853
Target:  5'- gCCGGAGGuGCUUCggCGggaccgCCGUCgCCg -3'
miRNA:   3'- -GGCCUUC-CGAGGuaGCaca---GGUAG-GG- -5'
6684 5' -55 NC_001847.1 + 39863 0.67 0.909455
Target:  5'- gCCGGuAGGCUUCGUCcacgcggcccggGUCCAggCCg -3'
miRNA:   3'- -GGCCuUCCGAGGUAGca----------CAGGUagGG- -5'
6684 5' -55 NC_001847.1 + 10675 0.66 0.933747
Target:  5'- gCCGGggGGCUCgCccuccgGUCGcGcCCGggcgcggCCCg -3'
miRNA:   3'- -GGCCuuCCGAG-G------UAGCaCaGGUa------GGG- -5'
6684 5' -55 NC_001847.1 + 83726 0.66 0.933747
Target:  5'- gCGGgcGGCUCCGUC-UGcgCCG-CCg -3'
miRNA:   3'- gGCCuuCCGAGGUAGcACa-GGUaGGg -5'
6684 5' -55 NC_001847.1 + 33920 0.66 0.938625
Target:  5'- uCgGGGAGGCUggCCucccCGUGUgCAggCCCg -3'
miRNA:   3'- -GgCCUUCCGA--GGua--GCACAgGUa-GGG- -5'
6684 5' -55 NC_001847.1 + 100835 0.66 0.938625
Target:  5'- cCCGGgcGGCUCCGgccagggcCGgagcgCCggCCCg -3'
miRNA:   3'- -GGCCuuCCGAGGUa-------GCaca--GGuaGGG- -5'
6684 5' -55 NC_001847.1 + 40989 0.66 0.921068
Target:  5'- gCCGGGccgcgcucaccuGCUCCggcGUCGUG-CCGUCCUg -3'
miRNA:   3'- -GGCCUuc----------CGAGG---UAGCACaGGUAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.