Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 6684 | 5' | -55 | NC_001847.1 | + | 108978 | 0.68 | 0.886194 |
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Target: 5'- -aGGGAGGCgcggCaAUUGUGUCCAggCUCa -3' miRNA: 3'- ggCCUUCCGa---GgUAGCACAGGUa-GGG- -5' |
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| 6684 | 5' | -55 | NC_001847.1 | + | 113488 | 0.66 | 0.933747 |
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Target: 5'- gCCGGggGGCUCgCccuccgGUCGcGcCCGggcgcggCCCg -3' miRNA: 3'- -GGCCuuCCGAG-G------UAGCaCaGGUa------GGG- -5' |
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| 6684 | 5' | -55 | NC_001847.1 | + | 120260 | 0.67 | 0.905787 |
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Target: 5'- gCGGAcGGCcCCGuagcguUCGcUGUCCA-CCCg -3' miRNA: 3'- gGCCUuCCGaGGU------AGC-ACAGGUaGGG- -5' |
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| 6684 | 5' | -55 | NC_001847.1 | + | 123502 | 1.13 | 0.002147 |
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Target: 5'- gCCGGAAGGCUCCAUCGUGUCCAUCCCc -3' miRNA: 3'- -GGCCUUCCGAGGUAGCACAGGUAGGG- -5' |
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| 6684 | 5' | -55 | NC_001847.1 | + | 127007 | 0.65 | 0.947673 |
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Target: 5'- cCCGcGAGGCU-CGUCGg--CCcgCCCg -3' miRNA: 3'- -GGCcUUCCGAgGUAGCacaGGuaGGG- -5' |
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| 6684 | 5' | -55 | NC_001847.1 | + | 128075 | 0.66 | 0.925447 |
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Target: 5'- cCCGGgcGGCUCgCcgCGUG-CCuugguggcgaaagCCCa -3' miRNA: 3'- -GGCCuuCCGAG-GuaGCACaGGua-----------GGG- -5' |
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| 6684 | 5' | -55 | NC_001847.1 | + | 129209 | 0.67 | 0.905787 |
|
Target: 5'- gCGGGcGGGC-CCGUCGUccgccGcCCAUCCg -3' miRNA: 3'- gGCCU-UCCGaGGUAGCA-----CaGGUAGGg -5' |
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| 6684 | 5' | -55 | NC_001847.1 | + | 130255 | 0.72 | 0.648828 |
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Target: 5'- gCGGAugcgacgacaaaauGGGCUUCcgCGUGgcugugcCCGUCCCg -3' miRNA: 3'- gGCCU--------------UCCGAGGuaGCACa------GGUAGGG- -5' |
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| 6684 | 5' | -55 | NC_001847.1 | + | 131348 | 0.69 | 0.807184 |
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Target: 5'- cCCGuGccGGCacgCCGUCGUGcagCaCAUCCCg -3' miRNA: 3'- -GGC-CuuCCGa--GGUAGCACa--G-GUAGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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