Results 41 - 49 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6684 | 5' | -55 | NC_001847.1 | + | 83726 | 0.66 | 0.933747 |
Target: 5'- gCGGgcGGCUCCGUC-UGcgCCG-CCg -3' miRNA: 3'- gGCCuuCCGAGGUAGcACa-GGUaGGg -5' |
|||||||
6684 | 5' | -55 | NC_001847.1 | + | 10675 | 0.66 | 0.933747 |
Target: 5'- gCCGGggGGCUCgCccuccgGUCGcGcCCGggcgcggCCCg -3' miRNA: 3'- -GGCCuuCCGAG-G------UAGCaCaGGUa------GGG- -5' |
|||||||
6684 | 5' | -55 | NC_001847.1 | + | 78268 | 0.66 | 0.928631 |
Target: 5'- gCCGGcGGGC-CCGUUGg--CCGcgCCCg -3' miRNA: 3'- -GGCCuUCCGaGGUAGCacaGGUa-GGG- -5' |
|||||||
6684 | 5' | -55 | NC_001847.1 | + | 128075 | 0.66 | 0.925447 |
Target: 5'- cCCGGgcGGCUCgCcgCGUG-CCuugguggcgaaagCCCa -3' miRNA: 3'- -GGCCuuCCGAG-GuaGCACaGGua-----------GGG- -5' |
|||||||
6684 | 5' | -55 | NC_001847.1 | + | 55563 | 0.67 | 0.917684 |
Target: 5'- cCCGGAcGGCgCCcgcagcacgAUCGUGUUugCAUCCa -3' miRNA: 3'- -GGCCUuCCGaGG---------UAGCACAG--GUAGGg -5' |
|||||||
6684 | 5' | -55 | NC_001847.1 | + | 82 | 0.67 | 0.917684 |
Target: 5'- cCCGGGcccgcucuGGGCUCCGccccuggGUCCGgcgCCCc -3' miRNA: 3'- -GGCCU--------UCCGAGGUagca---CAGGUa--GGG- -5' |
|||||||
6684 | 5' | -55 | NC_001847.1 | + | 39863 | 0.67 | 0.909455 |
Target: 5'- gCCGGuAGGCUUCGUCcacgcggcccggGUCCAggCCg -3' miRNA: 3'- -GGCCuUCCGAGGUAGca----------CAGGUagGG- -5' |
|||||||
6684 | 5' | -55 | NC_001847.1 | + | 26396 | 0.67 | 0.905787 |
Target: 5'- gCGGGcGGGC-CCGUCGUccgccGcCCAUCCg -3' miRNA: 3'- gGCCU-UCCGaGGUAGCA-----CaGGUAGGg -5' |
|||||||
6684 | 5' | -55 | NC_001847.1 | + | 80653 | 0.83 | 0.19468 |
Target: 5'- cCCGGccccGGCgccgCCGUCGuUGUCCGUCCCg -3' miRNA: 3'- -GGCCuu--CCGa---GGUAGC-ACAGGUAGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home