Results 101 - 120 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6685 | 3' | -58.2 | NC_001847.1 | + | 68791 | 0.7 | 0.540726 |
Target: 5'- gCCgCGGcGGC-CGCGCgagCGGGCCGAc-- -3' miRNA: 3'- -GG-GUC-CCGaGCGUGa--GCCCGGUUauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 43006 | 0.7 | 0.530793 |
Target: 5'- gCCgGGGGggCGCGC-CGGGCCGc--- -3' miRNA: 3'- -GGgUCCCgaGCGUGaGCCCGGUuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 27641 | 0.7 | 0.540726 |
Target: 5'- gCUCGGcaCUCGCGCUCGGGUCGGg-- -3' miRNA: 3'- -GGGUCccGAGCGUGAGCCCGGUUauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 134208 | 0.7 | 0.540726 |
Target: 5'- uCCCcGGGCgCGgGCUCGGGCUu---- -3' miRNA: 3'- -GGGuCCCGaGCgUGAGCCCGGuuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 53017 | 0.7 | 0.540726 |
Target: 5'- -aCAGcGGCggccgcugCGCGCUCGGGCCu---- -3' miRNA: 3'- ggGUC-CCGa-------GCGUGAGCCCGGuuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 31395 | 0.7 | 0.540726 |
Target: 5'- uCCCcGGGCgCGgGCUCGGGCUu---- -3' miRNA: 3'- -GGGuCCCGaGCgUGAGCCCGGuuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 63111 | 0.71 | 0.454148 |
Target: 5'- cCCCGGGGCcgccgcCGCGCaCGGGUCGGUu- -3' miRNA: 3'- -GGGUCCCGa-----GCGUGaGCCCGGUUAuu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 37128 | 0.71 | 0.501416 |
Target: 5'- cUCUGGGGCgCGCACgcccagCGGGCCuuUGGg -3' miRNA: 3'- -GGGUCCCGaGCGUGa-----GCCCGGuuAUU- -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 37037 | 0.71 | 0.491782 |
Target: 5'- gCC-GGGCUCGCACUCuagccuGGGCUGGg-- -3' miRNA: 3'- gGGuCCCGAGCGUGAG------CCCGGUUauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 39055 | 0.71 | 0.472776 |
Target: 5'- uCCCgcucguGGGGCUCGCGCagCGGGUUGAg-- -3' miRNA: 3'- -GGG------UCCCGAGCGUGa-GCCCGGUUauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 28343 | 0.71 | 0.463413 |
Target: 5'- cCCgCGGGGCcgCGCGCcCGGGCCc---- -3' miRNA: 3'- -GG-GUCCCGa-GCGUGaGCCCGGuuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 131156 | 0.71 | 0.463413 |
Target: 5'- cCCgCGGGGCcgCGCGCcCGGGCCc---- -3' miRNA: 3'- -GG-GUCCCGa-GCGUGaGCCCGGuuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 30447 | 0.72 | 0.444984 |
Target: 5'- gCCGGGGCU-GCACgaggUGGGCCGc--- -3' miRNA: 3'- gGGUCCCGAgCGUGa---GCCCGGUuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 101070 | 0.72 | 0.418131 |
Target: 5'- cCCCGGGGC-CGcCGCggGGGCCGGg-- -3' miRNA: 3'- -GGGUCCCGaGC-GUGagCCCGGUUauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 48602 | 0.73 | 0.359487 |
Target: 5'- aCCUuGGGCgCGCGCUCGGccguGCCGAUGu -3' miRNA: 3'- -GGGuCCCGaGCGUGAGCC----CGGUUAUu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 2091 | 0.73 | 0.383906 |
Target: 5'- cCCgCGGGGCcCGCGCggcggCGGGCCGcgAu -3' miRNA: 3'- -GG-GUCCCGaGCGUGa----GCCCGGUuaUu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 104904 | 0.73 | 0.383906 |
Target: 5'- cCCgCGGGGCcCGCGCggcggCGGGCCGcgAu -3' miRNA: 3'- -GG-GUCCCGaGCGUGa----GCCCGGUuaUu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 2941 | 0.73 | 0.392287 |
Target: 5'- --gAGGGCUCGCACUCcGGcGCCGu--- -3' miRNA: 3'- gggUCCCGAGCGUGAG-CC-CGGUuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 82918 | 0.73 | 0.399931 |
Target: 5'- gCCCGGGGgcuuuuuCUCGCugUCGaGGCCGc--- -3' miRNA: 3'- -GGGUCCC-------GAGCGugAGC-CCGGUuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 99070 | 0.73 | 0.374826 |
Target: 5'- gCCCGGGGCcgccucuUCGUGCUgGGGCCu---- -3' miRNA: 3'- -GGGUCCCG-------AGCGUGAgCCCGGuuauu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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