miRNA display CGI


Results 61 - 80 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6685 3' -58.2 NC_001847.1 + 102244 0.68 0.632149
Target:  5'- gUCCAGGcGCUCGCGCgCGGcGCgCAc--- -3'
miRNA:   3'- -GGGUCC-CGAGCGUGaGCC-CG-GUuauu -5'
6685 3' -58.2 NC_001847.1 + 81167 0.67 0.730368
Target:  5'- gCCCgccgcgccgcucggAGGGCUCGCGg-CGGcGCCAGc-- -3'
miRNA:   3'- -GGG--------------UCCCGAGCGUgaGCC-CGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 79105 0.67 0.6934
Target:  5'- uCCCAGGGgUCGUcgUCGcGGUCAAa-- -3'
miRNA:   3'- -GGGUCCCgAGCGugAGC-CCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 32100 0.67 0.6934
Target:  5'- gUCGGGGCgcgaggccCGgGCUCGGGCCc---- -3'
miRNA:   3'- gGGUCCCGa-------GCgUGAGCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 34284 0.67 0.70348
Target:  5'- gCUGGGcGC-CGCGCUCGcGGCCGu--- -3'
miRNA:   3'- gGGUCC-CGaGCGUGAGC-CCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 61838 0.67 0.6934
Target:  5'- gCCAGGGUggugUCGUACUCcagGGGCgGGUc- -3'
miRNA:   3'- gGGUCCCG----AGCGUGAG---CCCGgUUAuu -5'
6685 3' -58.2 NC_001847.1 + 134913 0.67 0.6934
Target:  5'- gUCGGGGCgcgaggccCGgGCUCGGGCCc---- -3'
miRNA:   3'- gGGUCCCGa-------GCgUGAGCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 34597 0.67 0.6934
Target:  5'- gCCCGGGcGCUgGCGCggCGGcgcGCCGAg-- -3'
miRNA:   3'- -GGGUCC-CGAgCGUGa-GCC---CGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 95539 0.67 0.707496
Target:  5'- cCCUGGGGCUggggccgcgccgcagCaGCGCUgGGGCCAc--- -3'
miRNA:   3'- -GGGUCCCGA---------------G-CGUGAgCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 3811 0.67 0.7135
Target:  5'- gCCgGGcGGCggcggCGCGCUgcCGGGCCAc--- -3'
miRNA:   3'- -GGgUC-CCGa----GCGUGA--GCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 125193 0.67 0.743104
Target:  5'- cCUCGGGGCagaagGCGCcCGGGCCGc--- -3'
miRNA:   3'- -GGGUCCCGag---CGUGaGCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 106933 0.67 0.743104
Target:  5'- uCCCGGGcCUCGCccccaucgucCUCGGGCCc---- -3'
miRNA:   3'- -GGGUCCcGAGCGu---------GAGCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 24975 0.67 0.743104
Target:  5'- gUCGGGcGCUCGCugUCGcuguugauGGCCAu--- -3'
miRNA:   3'- gGGUCC-CGAGCGugAGC--------CCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 63273 0.67 0.733321
Target:  5'- ---cGGGCcgCGCGCUCGcGGCCGc--- -3'
miRNA:   3'- ggguCCCGa-GCGUGAGC-CCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 19428 0.67 0.733321
Target:  5'- gCCCGuGGCggcaagCGCACaCGGGCCGc--- -3'
miRNA:   3'- -GGGUcCCGa-----GCGUGaGCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 28100 0.67 0.733321
Target:  5'- gCCCGGGGC-CGCGCgCGacaccGCCGAUu- -3'
miRNA:   3'- -GGGUCCCGaGCGUGaGCc----CGGUUAuu -5'
6685 3' -58.2 NC_001847.1 + 111288 0.67 0.72345
Target:  5'- gCCgGGGGCg-GCGCUC-GGCCGGg-- -3'
miRNA:   3'- -GGgUCCCGagCGUGAGcCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 113393 0.67 0.7135
Target:  5'- gCCGGcGGCcccccCGCGCgcgCGGGCCGGc-- -3'
miRNA:   3'- gGGUC-CCGa----GCGUGa--GCCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 2889 0.67 0.7135
Target:  5'- gCCGGGuGCgUCGCcguUCGGGCCGGa-- -3'
miRNA:   3'- gGGUCC-CG-AGCGug-AGCCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 106624 0.67 0.7135
Target:  5'- gCCgGGcGGCggcggCGCGCUgcCGGGCCAc--- -3'
miRNA:   3'- -GGgUC-CCGa----GCGUGA--GCCCGGUuauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.