miRNA display CGI


Results 81 - 100 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6685 3' -58.2 NC_001847.1 + 134913 0.67 0.6934
Target:  5'- gUCGGGGCgcgaggccCGgGCUCGGGCCc---- -3'
miRNA:   3'- gGGUCCCGa-------GCgUGAGCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 125193 0.67 0.743104
Target:  5'- cCUCGGGGCagaagGCGCcCGGGCCGc--- -3'
miRNA:   3'- -GGGUCCCGag---CGUGaGCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 106933 0.67 0.743104
Target:  5'- uCCCGGGcCUCGCccccaucgucCUCGGGCCc---- -3'
miRNA:   3'- -GGGUCCcGAGCGu---------GAGCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 24975 0.67 0.743104
Target:  5'- gUCGGGcGCUCGCugUCGcuguugauGGCCAu--- -3'
miRNA:   3'- gGGUCC-CGAGCGugAGC--------CCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 63273 0.67 0.733321
Target:  5'- ---cGGGCcgCGCGCUCGcGGCCGc--- -3'
miRNA:   3'- ggguCCCGa-GCGUGAGC-CCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 19428 0.67 0.733321
Target:  5'- gCCCGuGGCggcaagCGCACaCGGGCCGc--- -3'
miRNA:   3'- -GGGUcCCGa-----GCGUGaGCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 28100 0.67 0.733321
Target:  5'- gCCCGGGGC-CGCGCgCGacaccGCCGAUu- -3'
miRNA:   3'- -GGGUCCCGaGCGUGaGCc----CGGUUAuu -5'
6685 3' -58.2 NC_001847.1 + 81167 0.67 0.730368
Target:  5'- gCCCgccgcgccgcucggAGGGCUCGCGg-CGGcGCCAGc-- -3'
miRNA:   3'- -GGG--------------UCCCGAGCGUgaGCC-CGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 111288 0.67 0.72345
Target:  5'- gCCgGGGGCg-GCGCUC-GGCCGGg-- -3'
miRNA:   3'- -GGgUCCCGagCGUGAGcCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 2889 0.67 0.7135
Target:  5'- gCCGGGuGCgUCGCcguUCGGGCCGGa-- -3'
miRNA:   3'- gGGUCC-CG-AGCGug-AGCCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 106624 0.67 0.7135
Target:  5'- gCCgGGcGGCggcggCGCGCUgcCGGGCCAc--- -3'
miRNA:   3'- -GGgUC-CCGa----GCGUGA--GCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 83036 0.67 0.70348
Target:  5'- gCCCGcGGCcgcuagUGCGCUUGGGCCGc--- -3'
miRNA:   3'- -GGGUcCCGa-----GCGUGAGCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 13118 0.66 0.781169
Target:  5'- gCCGGGGCgCGCGggCGGcGCCGc--- -3'
miRNA:   3'- gGGUCCCGaGCGUgaGCC-CGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 78232 0.66 0.790372
Target:  5'- uCCCGggcGGGUUCGCcCUgGaGGCCGAc-- -3'
miRNA:   3'- -GGGU---CCCGAGCGuGAgC-CCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 45504 0.66 0.790372
Target:  5'- gCCCGGGGCgggCGCcgccGC-CGGGCg----- -3'
miRNA:   3'- -GGGUCCCGa--GCG----UGaGCCCGguuauu -5'
6685 3' -58.2 NC_001847.1 + 78276 0.66 0.790372
Target:  5'- gCCCGuuGGC-CGCGCcCGGGCCGc--- -3'
miRNA:   3'- -GGGUc-CCGaGCGUGaGCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 134199 0.66 0.790372
Target:  5'- gCguGGaGCggCGCGCgCGGGCCGAg-- -3'
miRNA:   3'- gGguCC-CGa-GCGUGaGCCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 13454 0.66 0.771831
Target:  5'- aUCUAgcGGGCgCGCaccuGCUCGGGCCGc--- -3'
miRNA:   3'- -GGGU--CCCGaGCG----UGAGCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 114089 0.66 0.771831
Target:  5'- cCCCAGGGcCUCagggccgggGguCUCGGGgCAAg-- -3'
miRNA:   3'- -GGGUCCC-GAG---------CguGAGCCCgGUUauu -5'
6685 3' -58.2 NC_001847.1 + 84641 0.66 0.771831
Target:  5'- gCCGcGGCUgcugCGCGCUCGGG-CGAUGu -3'
miRNA:   3'- gGGUcCCGA----GCGUGAGCCCgGUUAUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.