Results 101 - 120 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6685 | 3' | -58.2 | NC_001847.1 | + | 134199 | 0.66 | 0.790372 |
Target: 5'- gCguGGaGCggCGCGCgCGGGCCGAg-- -3' miRNA: 3'- gGguCC-CGa-GCGUGaGCCCGGUUauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 78276 | 0.66 | 0.790372 |
Target: 5'- gCCCGuuGGC-CGCGCcCGGGCCGc--- -3' miRNA: 3'- -GGGUc-CCGaGCGUGaGCCCGGUuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 126391 | 0.66 | 0.775582 |
Target: 5'- cCCCGGGGCggaUGCGCUUaccuugccuuugccgGGGCUGGg-- -3' miRNA: 3'- -GGGUCCCGa--GCGUGAG---------------CCCGGUUauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 78232 | 0.66 | 0.790372 |
Target: 5'- uCCCGggcGGGUUCGCcCUgGaGGCCGAc-- -3' miRNA: 3'- -GGGU---CCCGAGCGuGAgC-CCGGUUauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 23578 | 0.66 | 0.775582 |
Target: 5'- cCCCGGGGCggaUGCGCUUaccuugccuuugccgGGGCUGGg-- -3' miRNA: 3'- -GGGUCCCGa--GCGUGAG---------------CCCGGUUauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 45504 | 0.66 | 0.790372 |
Target: 5'- gCCCGGGGCgggCGCcgccGC-CGGGCg----- -3' miRNA: 3'- -GGGUCCCGa--GCG----UGaGCCCGguuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 82553 | 0.66 | 0.771831 |
Target: 5'- gCCCGcGGGCUCgGC-CUCGGccGCCGc--- -3' miRNA: 3'- -GGGU-CCCGAG-CGuGAGCC--CGGUuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 5793 | 0.66 | 0.762368 |
Target: 5'- cCCCGGGcccggcaccgcGCUUGCGCUUGGcgcGCCGGg-- -3' miRNA: 3'- -GGGUCC-----------CGAGCGUGAGCC---CGGUUauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 120119 | 0.66 | 0.751826 |
Target: 5'- gCCCGGcggccgcGGCUCGCGCggccccacCGcGGCCGAg-- -3' miRNA: 3'- -GGGUC-------CCGAGCGUGa-------GC-CCGGUUauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 44289 | 0.66 | 0.75279 |
Target: 5'- aCCGGcGGCgcggCGCgGCgcggCGGGCCAGc-- -3' miRNA: 3'- gGGUC-CCGa---GCG-UGa---GCCCGGUUauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 14205 | 0.66 | 0.762368 |
Target: 5'- -gCGGGGCUgGCGgUCaGGCCGGc-- -3' miRNA: 3'- ggGUCCCGAgCGUgAGcCCGGUUauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 78979 | 0.66 | 0.75279 |
Target: 5'- cCUCGGGGg-CGUGCUCGGGCg----- -3' miRNA: 3'- -GGGUCCCgaGCGUGAGCCCGguuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 66783 | 0.66 | 0.75279 |
Target: 5'- uUCGGGGCUCGUGCUCacgaccGGCUAc--- -3' miRNA: 3'- gGGUCCCGAGCGUGAGc-----CCGGUuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 44356 | 0.66 | 0.762368 |
Target: 5'- gCCCGGGGCU-GCugaaCGGGCCc---- -3' miRNA: 3'- -GGGUCCCGAgCGuga-GCCCGGuuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 2537 | 0.66 | 0.762368 |
Target: 5'- aCCCGGcGGCgcuccCGcCGC-CGGGCCGGg-- -3' miRNA: 3'- -GGGUC-CCGa----GC-GUGaGCCCGGUUauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 3144 | 0.66 | 0.762368 |
Target: 5'- gCCCGGcGGCgccggCgGCGCggCGGGCCGc--- -3' miRNA: 3'- -GGGUC-CCGa----G-CGUGa-GCCCGGUuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 29283 | 0.66 | 0.762368 |
Target: 5'- aCCCGGaGCgCGUGCUcCGGGCCGc--- -3' miRNA: 3'- -GGGUCcCGaGCGUGA-GCCCGGUuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 120700 | 0.66 | 0.762368 |
Target: 5'- -gCAGcgcGGCcgCGCGCUCGGcGCCAAa-- -3' miRNA: 3'- ggGUC---CCGa-GCGUGAGCC-CGGUUauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 127859 | 0.66 | 0.762368 |
Target: 5'- gCCAGcGGCUCGUACUgCGGaGCg----- -3' miRNA: 3'- gGGUC-CCGAGCGUGA-GCC-CGguuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 41616 | 0.66 | 0.771831 |
Target: 5'- aCCCGGGcGCUCcggggcCGC-CGGGCgAGUGGg -3' miRNA: 3'- -GGGUCC-CGAGc-----GUGaGCCCGgUUAUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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