Results 121 - 129 of 129 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 6685 | 3' | -58.2 | NC_001847.1 | + | 134199 | 0.66 | 0.790372 |
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Target: 5'- gCguGGaGCggCGCGCgCGGGCCGAg-- -3' miRNA: 3'- gGguCC-CGa-GCGUGaGCCCGGUUauu -5' |
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| 6685 | 3' | -58.2 | NC_001847.1 | + | 123571 | 0.66 | 0.790372 |
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Target: 5'- gCCGGGGC-CGcCGCgagCGgGGCCGGa-- -3' miRNA: 3'- gGGUCCCGaGC-GUGa--GC-CCGGUUauu -5' |
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| 6685 | 3' | -58.2 | NC_001847.1 | + | 73240 | 0.66 | 0.790372 |
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Target: 5'- -gCGGcGGCgcgggCGCGCUCGaGGCCGu--- -3' miRNA: 3'- ggGUC-CCGa----GCGUGAGC-CCGGUuauu -5' |
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| 6685 | 3' | -58.2 | NC_001847.1 | + | 15408 | 0.66 | 0.790372 |
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Target: 5'- gCCGGGuuucgGCUCGCcCUCGGcGCCu---- -3' miRNA: 3'- gGGUCC-----CGAGCGuGAGCC-CGGuuauu -5' |
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| 6685 | 3' | -58.2 | NC_001847.1 | + | 115111 | 0.66 | 0.790372 |
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Target: 5'- gCCCAGGGCggcggcCGCA---GGGCCGc--- -3' miRNA: 3'- -GGGUCCCGa-----GCGUgagCCCGGUuauu -5' |
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| 6685 | 3' | -58.2 | NC_001847.1 | + | 126533 | 0.66 | 0.781169 |
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Target: 5'- cCCCggcGGGGCUUGCGCUgcGGCUGAc-- -3' miRNA: 3'- -GGG---UCCCGAGCGUGAgcCCGGUUauu -5' |
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| 6685 | 3' | -58.2 | NC_001847.1 | + | 106519 | 0.66 | 0.781169 |
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Target: 5'- aCCCGcGGGCacuagCGC-CUCGGGCg----- -3' miRNA: 3'- -GGGU-CCCGa----GCGuGAGCCCGguuauu -5' |
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| 6685 | 3' | -58.2 | NC_001847.1 | + | 101183 | 0.66 | 0.781169 |
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Target: 5'- gCCCGGcGCcagCGCGCUCGGGUUc---- -3' miRNA: 3'- -GGGUCcCGa--GCGUGAGCCCGGuuauu -5' |
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| 6685 | 3' | -58.2 | NC_001847.1 | + | 120119 | 0.66 | 0.751826 |
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Target: 5'- gCCCGGcggccgcGGCUCGCGCggccccacCGcGGCCGAg-- -3' miRNA: 3'- -GGGUC-------CCGAGCGUGa-------GC-CCGGUUauu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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