miRNA display CGI


Results 81 - 100 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6685 3' -58.2 NC_001847.1 + 8475 0.67 0.72345
Target:  5'- gCCgGGGGCg-GCGCUC-GGCCGGg-- -3'
miRNA:   3'- -GGgUCCCGagCGUGAGcCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 111288 0.67 0.72345
Target:  5'- gCCgGGGGCg-GCGCUC-GGCCGGg-- -3'
miRNA:   3'- -GGgUCCCGagCGUGAGcCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 81167 0.67 0.730368
Target:  5'- gCCCgccgcgccgcucggAGGGCUCGCGg-CGGcGCCAGc-- -3'
miRNA:   3'- -GGG--------------UCCCGAGCGUgaGCC-CGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 19428 0.67 0.733321
Target:  5'- gCCCGuGGCggcaagCGCACaCGGGCCGc--- -3'
miRNA:   3'- -GGGUcCCGa-----GCGUGaGCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 28100 0.67 0.733321
Target:  5'- gCCCGGGGC-CGCGCgCGacaccGCCGAUu- -3'
miRNA:   3'- -GGGUCCCGaGCGUGaGCc----CGGUUAuu -5'
6685 3' -58.2 NC_001847.1 + 63273 0.67 0.733321
Target:  5'- ---cGGGCcgCGCGCUCGcGGCCGc--- -3'
miRNA:   3'- ggguCCCGa-GCGUGAGC-CCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 24975 0.67 0.743104
Target:  5'- gUCGGGcGCUCGCugUCGcuguugauGGCCAu--- -3'
miRNA:   3'- gGGUCC-CGAGCGugAGC--------CCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 106933 0.67 0.743104
Target:  5'- uCCCGGGcCUCGCccccaucgucCUCGGGCCc---- -3'
miRNA:   3'- -GGGUCCcGAGCGu---------GAGCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 125193 0.67 0.743104
Target:  5'- cCUCGGGGCagaagGCGCcCGGGCCGc--- -3'
miRNA:   3'- -GGGUCCCGag---CGUGaGCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 4120 0.67 0.743104
Target:  5'- uCCCGGGcCUCGCccccaucgucCUCGGGCCc---- -3'
miRNA:   3'- -GGGUCCcGAGCGu---------GAGCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 89692 0.67 0.743104
Target:  5'- aCCCGGGGUaUGCg--CGGGCCcAUGc -3'
miRNA:   3'- -GGGUCCCGaGCGugaGCCCGGuUAUu -5'
6685 3' -58.2 NC_001847.1 + 22380 0.67 0.743104
Target:  5'- cCUCGGGGCagaagGCGCcCGGGCCGc--- -3'
miRNA:   3'- -GGGUCCCGag---CGUGaGCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 2509 0.66 0.751826
Target:  5'- gCgAGGGCcgccUCGCGCUuugcugcCGGGCCGcgGGa -3'
miRNA:   3'- gGgUCCCG----AGCGUGA-------GCCCGGUuaUU- -5'
6685 3' -58.2 NC_001847.1 + 120119 0.66 0.751826
Target:  5'- gCCCGGcggccgcGGCUCGCGCggccccacCGcGGCCGAg-- -3'
miRNA:   3'- -GGGUC-------CCGAGCGUGa-------GC-CCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 78979 0.66 0.75279
Target:  5'- cCUCGGGGg-CGUGCUCGGGCg----- -3'
miRNA:   3'- -GGGUCCCgaGCGUGAGCCCGguuauu -5'
6685 3' -58.2 NC_001847.1 + 66783 0.66 0.75279
Target:  5'- uUCGGGGCUCGUGCUCacgaccGGCUAc--- -3'
miRNA:   3'- gGGUCCCGAGCGUGAGc-----CCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 44289 0.66 0.75279
Target:  5'- aCCGGcGGCgcggCGCgGCgcggCGGGCCAGc-- -3'
miRNA:   3'- gGGUC-CCGa---GCG-UGa---GCCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 105957 0.66 0.762368
Target:  5'- gCCCGGcGGCgccggCgGCGCggCGGGCCGc--- -3'
miRNA:   3'- -GGGUC-CCGa----G-CGUGa-GCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 132096 0.66 0.762368
Target:  5'- aCCCGGaGCgCGUGCUcCGGGCCGc--- -3'
miRNA:   3'- -GGGUCcCGaGCGUGA-GCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 5793 0.66 0.762368
Target:  5'- cCCCGGGcccggcaccgcGCUUGCGCUUGGcgcGCCGGg-- -3'
miRNA:   3'- -GGGUCC-----------CGAGCGUGAGCC---CGGUUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.