Results 61 - 80 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6685 | 3' | -58.2 | NC_001847.1 | + | 68830 | 0.69 | 0.581017 |
Target: 5'- gCCgCAGGGCgccgCGaagaGCUCGGGCgCGAg-- -3' miRNA: 3'- -GG-GUCCCGa---GCg---UGAGCCCG-GUUauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 70380 | 0.67 | 0.70348 |
Target: 5'- gCCGGGGCgcgagcUCGCGCU--GGCCAAg-- -3' miRNA: 3'- gGGUCCCG------AGCGUGAgcCCGGUUauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 72823 | 0.69 | 0.621891 |
Target: 5'- aUCGGGGCcaUgGCGCUCGGGCg----- -3' miRNA: 3'- gGGUCCCG--AgCGUGAGCCCGguuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 73140 | 0.68 | 0.673094 |
Target: 5'- gCCgCAGGGCccCGCGCcgcucuUCGGGCCc---- -3' miRNA: 3'- -GG-GUCCCGa-GCGUG------AGCCCGGuuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 73240 | 0.66 | 0.790372 |
Target: 5'- -gCGGcGGCgcgggCGCGCUCGaGGCCGu--- -3' miRNA: 3'- ggGUC-CCGa----GCGUGAGC-CCGGUuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 74110 | 0.68 | 0.652654 |
Target: 5'- gCCCGGGGCggccgCGCccggggaugugACgcgCGGcGCCGAUGg -3' miRNA: 3'- -GGGUCCCGa----GCG-----------UGa--GCC-CGGUUAUu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 77252 | 0.68 | 0.652654 |
Target: 5'- gCCCGGGGCggUUGCGCccCGGGCg----- -3' miRNA: 3'- -GGGUCCCG--AGCGUGa-GCCCGguuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 78232 | 0.66 | 0.790372 |
Target: 5'- uCCCGggcGGGUUCGCcCUgGaGGCCGAc-- -3' miRNA: 3'- -GGGU---CCCGAGCGuGAgC-CCGGUUauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 78276 | 0.66 | 0.790372 |
Target: 5'- gCCCGuuGGC-CGCGCcCGGGCCGc--- -3' miRNA: 3'- -GGGUc-CCGaGCGUGaGCCCGGUuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 78979 | 0.66 | 0.75279 |
Target: 5'- cCUCGGGGg-CGUGCUCGGGCg----- -3' miRNA: 3'- -GGGUCCCgaGCGUGAGCCCGguuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 79105 | 0.67 | 0.6934 |
Target: 5'- uCCCAGGGgUCGUcgUCGcGGUCAAa-- -3' miRNA: 3'- -GGGUCCCgAGCGugAGC-CCGGUUauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 79557 | 0.69 | 0.570873 |
Target: 5'- gCUGGGGCUCGCggggggcgccggGCUCGcGGCCu---- -3' miRNA: 3'- gGGUCCCGAGCG------------UGAGC-CCGGuuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 81167 | 0.67 | 0.730368 |
Target: 5'- gCCCgccgcgccgcucggAGGGCUCGCGg-CGGcGCCAGc-- -3' miRNA: 3'- -GGG--------------UCCCGAGCGUgaGCC-CGGUUauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 82553 | 0.66 | 0.771831 |
Target: 5'- gCCCGcGGGCUCgGC-CUCGGccGCCGc--- -3' miRNA: 3'- -GGGU-CCCGAG-CGuGAGCC--CGGUuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 82918 | 0.73 | 0.399931 |
Target: 5'- gCCCGGGGgcuuuuuCUCGCugUCGaGGCCGc--- -3' miRNA: 3'- -GGGUCCC-------GAGCGugAGC-CCGGUuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 83036 | 0.67 | 0.70348 |
Target: 5'- gCCCGcGGCcgcuagUGCGCUUGGGCCGc--- -3' miRNA: 3'- -GGGUcCCGa-----GCGUGAGCCCGGUuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 84641 | 0.66 | 0.771831 |
Target: 5'- gCCGcGGCUgcugCGCGCUCGGG-CGAUGu -3' miRNA: 3'- gGGUcCCGA----GCGUGAGCCCgGUUAUu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 89692 | 0.67 | 0.743104 |
Target: 5'- aCCCGGGGUaUGCg--CGGGCCcAUGc -3' miRNA: 3'- -GGGUCCCGaGCGugaGCCCGGuUAUu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 90864 | 0.66 | 0.790372 |
Target: 5'- gCCGGGGCUgGUG-UCGaGGCCGGg-- -3' miRNA: 3'- gGGUCCCGAgCGUgAGC-CCGGUUauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 92406 | 0.68 | 0.673094 |
Target: 5'- aCCCAGGGgggCGCcagcccgaACUCGcGCCGGUAAg -3' miRNA: 3'- -GGGUCCCga-GCG--------UGAGCcCGGUUAUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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