Results 81 - 100 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6685 | 3' | -58.2 | NC_001847.1 | + | 95539 | 0.67 | 0.707496 |
Target: 5'- cCCUGGGGCUggggccgcgccgcagCaGCGCUgGGGCCAc--- -3' miRNA: 3'- -GGGUCCCGA---------------G-CGUGAgCCCGGUuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 96284 | 0.77 | 0.209099 |
Target: 5'- aCCGGGGC-CGUACUCGgGGCCGGc-- -3' miRNA: 3'- gGGUCCCGaGCGUGAGC-CCGGUUauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 97469 | 0.69 | 0.600386 |
Target: 5'- gCCAGGGCcgCGCGCUaagcccgCGGGCUu---- -3' miRNA: 3'- gGGUCCCGa-GCGUGA-------GCCCGGuuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 97950 | 0.68 | 0.652654 |
Target: 5'- aCCGGGcGcCUCGCAC-CGGGCUc---- -3' miRNA: 3'- gGGUCC-C-GAGCGUGaGCCCGGuuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 98047 | 0.69 | 0.611642 |
Target: 5'- aCCAgcGGGCcgcucucCGCGCUCaggcGGGCCAGUAc -3' miRNA: 3'- gGGU--CCCGa------GCGUGAG----CCCGGUUAUu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 99070 | 0.73 | 0.374826 |
Target: 5'- gCCCGGGGCcgccucuUCGUGCUgGGGCCu---- -3' miRNA: 3'- -GGGUCCCG-------AGCGUGAgCCCGGuuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 101070 | 0.72 | 0.418131 |
Target: 5'- cCCCGGGGC-CGcCGCggGGGCCGGg-- -3' miRNA: 3'- -GGGUCCCGaGC-GUGagCCCGGUUauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 101183 | 0.66 | 0.781169 |
Target: 5'- gCCCGGcGCcagCGCGCUCGGGUUc---- -3' miRNA: 3'- -GGGUCcCGa--GCGUGAGCCCGGuuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 102244 | 0.68 | 0.632149 |
Target: 5'- gUCCAGGcGCUCGCGCgCGGcGCgCAc--- -3' miRNA: 3'- -GGGUCC-CGAGCGUGaGCC-CG-GUuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 103115 | 0.68 | 0.683268 |
Target: 5'- gCgGGGGCUucccCGCGCgagcgCGGGCCGc--- -3' miRNA: 3'- gGgUCCCGA----GCGUGa----GCCCGGUuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 103487 | 0.69 | 0.601408 |
Target: 5'- cCUCGGGGCgcgCGgGCUCcGGGCCc---- -3' miRNA: 3'- -GGGUCCCGa--GCgUGAG-CCCGGuuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 104386 | 0.68 | 0.683268 |
Target: 5'- gCCAGcacGGCgcgCGCcagcgcgccGCUCGGGCCAGc-- -3' miRNA: 3'- gGGUC---CCGa--GCG---------UGAGCCCGGUUauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 104904 | 0.73 | 0.383906 |
Target: 5'- cCCgCGGGGCcCGCGCggcggCGGGCCGcgAu -3' miRNA: 3'- -GG-GUCCCGaGCGUGa----GCCCGGUuaUu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 105350 | 0.66 | 0.762368 |
Target: 5'- aCCCGGcGGCgcuccCGcCGC-CGGGCCGGg-- -3' miRNA: 3'- -GGGUC-CCGa----GC-GUGaGCCCGGUUauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 105797 | 0.67 | 0.70348 |
Target: 5'- gCCGGGGCcgCGCGCU-GGaGCCGc--- -3' miRNA: 3'- gGGUCCCGa-GCGUGAgCC-CGGUuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 105957 | 0.66 | 0.762368 |
Target: 5'- gCCCGGcGGCgccggCgGCGCggCGGGCCGc--- -3' miRNA: 3'- -GGGUC-CCGa----G-CGUGa-GCCCGGUuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 106519 | 0.66 | 0.781169 |
Target: 5'- aCCCGcGGGCacuagCGC-CUCGGGCg----- -3' miRNA: 3'- -GGGU-CCCGa----GCGuGAGCCCGguuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 106624 | 0.67 | 0.7135 |
Target: 5'- gCCgGGcGGCggcggCGCGCUgcCGGGCCAc--- -3' miRNA: 3'- -GGgUC-CCGa----GCGUGA--GCCCGGUuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 106933 | 0.67 | 0.743104 |
Target: 5'- uCCCGGGcCUCGCccccaucgucCUCGGGCCc---- -3' miRNA: 3'- -GGGUCCcGAGCGu---------GAGCCCGGuuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 107729 | 0.7 | 0.560772 |
Target: 5'- cCCCGGGGCUa-CAaccCUUGGGCCGGc-- -3' miRNA: 3'- -GGGUCCCGAgcGU---GAGCCCGGUUauu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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