miRNA display CGI


Results 101 - 120 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6685 3' -58.2 NC_001847.1 + 111288 0.67 0.72345
Target:  5'- gCCgGGGGCg-GCGCUC-GGCCGGg-- -3'
miRNA:   3'- -GGgUCCCGagCGUGAGcCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 113215 0.76 0.260293
Target:  5'- gCUCGGacuccGGCUCGCGCUCGGaGCCAGa-- -3'
miRNA:   3'- -GGGUC-----CCGAGCGUGAGCC-CGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 113393 0.67 0.7135
Target:  5'- gCCGGcGGCcccccCGCGCgcgCGGGCCGGc-- -3'
miRNA:   3'- gGGUC-CCGa----GCGUGa--GCCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 114089 0.66 0.771831
Target:  5'- cCCCAGGGcCUCagggccgggGguCUCGGGgCAAg-- -3'
miRNA:   3'- -GGGUCCC-GAG---------CguGAGCCCgGUUauu -5'
6685 3' -58.2 NC_001847.1 + 115111 0.66 0.790372
Target:  5'- gCCCAGGGCggcggcCGCA---GGGCCGc--- -3'
miRNA:   3'- -GGGUCCCGa-----GCGUgagCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 115534 0.69 0.570873
Target:  5'- gCCCcGGGCcCGaGCUCGGGCCc---- -3'
miRNA:   3'- -GGGuCCCGaGCgUGAGCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 116418 0.74 0.321255
Target:  5'- gCCCcGGGCcgCGCGCUUGGGCuCGAg-- -3'
miRNA:   3'- -GGGuCCCGa-GCGUGAGCCCG-GUUauu -5'
6685 3' -58.2 NC_001847.1 + 118878 0.7 0.511133
Target:  5'- aCCCGGGcGCUCgguGCACg-GGGCCGGg-- -3'
miRNA:   3'- -GGGUCC-CGAG---CGUGagCCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 119268 0.67 0.70348
Target:  5'- gCCCGcGcGGCUCGUcga-GGGCCAGUAc -3'
miRNA:   3'- -GGGU-C-CCGAGCGugagCCCGGUUAUu -5'
6685 3' -58.2 NC_001847.1 + 120119 0.66 0.751826
Target:  5'- gCCCGGcggccgcGGCUCGCGCggccccacCGcGGCCGAg-- -3'
miRNA:   3'- -GGGUC-------CCGAGCGUGa-------GC-CCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 120700 0.66 0.762368
Target:  5'- -gCAGcgcGGCcgCGCGCUCGGcGCCAAa-- -3'
miRNA:   3'- ggGUC---CCGa-GCGUGAGCC-CGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 121180 0.67 0.70348
Target:  5'- gCCAggggcGGGCUCGC-CaCGGGCCGc--- -3'
miRNA:   3'- gGGU-----CCCGAGCGuGaGCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 122872 0.69 0.621891
Target:  5'- uUCCGGGGC--GCGCUCGGGUgGu--- -3'
miRNA:   3'- -GGGUCCCGagCGUGAGCCCGgUuauu -5'
6685 3' -58.2 NC_001847.1 + 123478 0.68 0.632149
Target:  5'- gCCGcGGGCUCG-GCUgGGGCCGc--- -3'
miRNA:   3'- gGGU-CCCGAGCgUGAgCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 123517 0.7 0.560772
Target:  5'- gCCAGGGCUgcCGCggGCUCGgcuaaGGCCAAg-- -3'
miRNA:   3'- gGGUCCCGA--GCG--UGAGC-----CCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 123571 0.66 0.790372
Target:  5'- gCCGGGGC-CGcCGCgagCGgGGCCGGa-- -3'
miRNA:   3'- gGGUCCCGaGC-GUGa--GC-CCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 125193 0.67 0.743104
Target:  5'- cCUCGGGGCagaagGCGCcCGGGCCGc--- -3'
miRNA:   3'- -GGGUCCCGag---CGUGaGCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 126391 0.66 0.775582
Target:  5'- cCCCGGGGCggaUGCGCUUaccuugccuuugccgGGGCUGGg-- -3'
miRNA:   3'- -GGGUCCCGa--GCGUGAG---------------CCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 126533 0.66 0.781169
Target:  5'- cCCCggcGGGGCUUGCGCUgcGGCUGAc-- -3'
miRNA:   3'- -GGG---UCCCGAGCGUGAgcCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 126816 0.81 0.122441
Target:  5'- uCCCAGaaUUCGCACUCGGGCUAAUAAu -3'
miRNA:   3'- -GGGUCccGAGCGUGAGCCCGGUUAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.