miRNA display CGI


Results 81 - 100 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6685 3' -58.2 NC_001847.1 + 44356 0.66 0.762368
Target:  5'- gCCCGGGGCU-GCugaaCGGGCCc---- -3'
miRNA:   3'- -GGGUCCCGAgCGuga-GCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 44289 0.66 0.75279
Target:  5'- aCCGGcGGCgcggCGCgGCgcggCGGGCCAGc-- -3'
miRNA:   3'- gGGUC-CCGa---GCG-UGa---GCCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 43642 0.69 0.570873
Target:  5'- -aCAGGGCgcgggCGCACgaCGGGCgAGUGu -3'
miRNA:   3'- ggGUCCCGa----GCGUGa-GCCCGgUUAUu -5'
6685 3' -58.2 NC_001847.1 + 43593 0.69 0.611642
Target:  5'- cCCCAGcGUg-GCGCUgGGGCCGGUGc -3'
miRNA:   3'- -GGGUCcCGagCGUGAgCCCGGUUAUu -5'
6685 3' -58.2 NC_001847.1 + 43006 0.7 0.530793
Target:  5'- gCCgGGGGggCGCGC-CGGGCCGc--- -3'
miRNA:   3'- -GGgUCCCgaGCGUGaGCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 42987 0.68 0.632149
Target:  5'- gCCC-GGGUUCGCugUCggcGGGCCc---- -3'
miRNA:   3'- -GGGuCCCGAGCGugAG---CCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 41616 0.66 0.771831
Target:  5'- aCCCGGGcGCUCcggggcCGC-CGGGCgAGUGGg -3'
miRNA:   3'- -GGGUCC-CGAGc-----GUGaGCCCGgUUAUU- -5'
6685 3' -58.2 NC_001847.1 + 39055 0.71 0.472776
Target:  5'- uCCCgcucguGGGGCUCGCGCagCGGGUUGAg-- -3'
miRNA:   3'- -GGG------UCCCGAGCGUGa-GCCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 37128 0.71 0.501416
Target:  5'- cUCUGGGGCgCGCACgcccagCGGGCCuuUGGg -3'
miRNA:   3'- -GGGUCCCGaGCGUGa-----GCCCGGuuAUU- -5'
6685 3' -58.2 NC_001847.1 + 37037 0.71 0.491782
Target:  5'- gCC-GGGCUCGCACUCuagccuGGGCUGGg-- -3'
miRNA:   3'- gGGuCCCGAGCGUGAG------CCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 34597 0.67 0.6934
Target:  5'- gCCCGGGcGCUgGCGCggCGGcgcGCCGAg-- -3'
miRNA:   3'- -GGGUCC-CGAgCGUGa-GCC---CGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 34284 0.67 0.70348
Target:  5'- gCUGGGcGC-CGCGCUCGcGGCCGu--- -3'
miRNA:   3'- gGGUCC-CGaGCGUGAGC-CCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 32100 0.67 0.6934
Target:  5'- gUCGGGGCgcgaggccCGgGCUCGGGCCc---- -3'
miRNA:   3'- gGGUCCCGa-------GCgUGAGCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 32051 0.69 0.621891
Target:  5'- gCCCGcgcGGGCUCgGCggcccccggGCUCGGGCCc---- -3'
miRNA:   3'- -GGGU---CCCGAG-CG---------UGAGCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 31395 0.7 0.540726
Target:  5'- uCCCcGGGCgCGgGCUCGGGCUu---- -3'
miRNA:   3'- -GGGuCCCGaGCgUGAGCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 30447 0.72 0.444984
Target:  5'- gCCGGGGCU-GCACgaggUGGGCCGc--- -3'
miRNA:   3'- gGGUCCCGAgCGUGa---GCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 29283 0.66 0.762368
Target:  5'- aCCCGGaGCgCGUGCUcCGGGCCGc--- -3'
miRNA:   3'- -GGGUCcCGaGCGUGA-GCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 28343 0.71 0.463413
Target:  5'- cCCgCGGGGCcgCGCGCcCGGGCCc---- -3'
miRNA:   3'- -GG-GUCCCGa-GCGUGaGCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 28100 0.67 0.733321
Target:  5'- gCCCGGGGC-CGCGCgCGacaccGCCGAUu- -3'
miRNA:   3'- -GGGUCCCGaGCGUGaGCc----CGGUUAuu -5'
6685 3' -58.2 NC_001847.1 + 27641 0.7 0.540726
Target:  5'- gCUCGGcaCUCGCGCUCGGGUCGGg-- -3'
miRNA:   3'- -GGGUCccGAGCGUGAGCCCGGUUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.