Results 121 - 129 of 129 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 6685 | 3' | -58.2 | NC_001847.1 | + | 4120 | 0.67 | 0.743104 |
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Target: 5'- uCCCGGGcCUCGCccccaucgucCUCGGGCCc---- -3' miRNA: 3'- -GGGUCCcGAGCGu---------GAGCCCGGuuauu -5' |
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| 6685 | 3' | -58.2 | NC_001847.1 | + | 22380 | 0.67 | 0.743104 |
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Target: 5'- cCUCGGGGCagaagGCGCcCGGGCCGc--- -3' miRNA: 3'- -GGGUCCCGag---CGUGaGCCCGGUuauu -5' |
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| 6685 | 3' | -58.2 | NC_001847.1 | + | 89692 | 0.67 | 0.743104 |
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Target: 5'- aCCCGGGGUaUGCg--CGGGCCcAUGc -3' miRNA: 3'- -GGGUCCCGaGCGugaGCCCGGuUAUu -5' |
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| 6685 | 3' | -58.2 | NC_001847.1 | + | 120119 | 0.66 | 0.751826 |
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Target: 5'- gCCCGGcggccgcGGCUCGCGCggccccacCGcGGCCGAg-- -3' miRNA: 3'- -GGGUC-------CCGAGCGUGa-------GC-CCGGUUauu -5' |
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| 6685 | 3' | -58.2 | NC_001847.1 | + | 66783 | 0.66 | 0.75279 |
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Target: 5'- uUCGGGGCUCGUGCUCacgaccGGCUAc--- -3' miRNA: 3'- gGGUCCCGAGCGUGAGc-----CCGGUuauu -5' |
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| 6685 | 3' | -58.2 | NC_001847.1 | + | 44289 | 0.66 | 0.75279 |
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Target: 5'- aCCGGcGGCgcggCGCgGCgcggCGGGCCAGc-- -3' miRNA: 3'- gGGUC-CCGa---GCG-UGa---GCCCGGUUauu -5' |
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| 6685 | 3' | -58.2 | NC_001847.1 | + | 14205 | 0.66 | 0.762368 |
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Target: 5'- -gCGGGGCUgGCGgUCaGGCCGGc-- -3' miRNA: 3'- ggGUCCCGAgCGUgAGcCCGGUUauu -5' |
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| 6685 | 3' | -58.2 | NC_001847.1 | + | 44356 | 0.66 | 0.762368 |
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Target: 5'- gCCCGGGGCU-GCugaaCGGGCCc---- -3' miRNA: 3'- -GGGUCCCGAgCGuga-GCCCGGuuauu -5' |
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| 6685 | 3' | -58.2 | NC_001847.1 | + | 78276 | 0.66 | 0.790372 |
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Target: 5'- gCCCGuuGGC-CGCGCcCGGGCCGc--- -3' miRNA: 3'- -GGGUc-CCGaGCGUGaGCCCGGUuauu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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