miRNA display CGI


Results 81 - 100 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6685 3' -58.2 NC_001847.1 + 15641 0.77 0.219669
Target:  5'- cCCCuccGGGCUCGgGCUCGGGCuCGGg-- -3'
miRNA:   3'- -GGGu--CCCGAGCgUGAGCCCG-GUUauu -5'
6685 3' -58.2 NC_001847.1 + 105350 0.66 0.762368
Target:  5'- aCCCGGcGGCgcuccCGcCGC-CGGGCCGGg-- -3'
miRNA:   3'- -GGGUC-CCGa----GC-GUGaGCCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 105957 0.66 0.762368
Target:  5'- gCCCGGcGGCgccggCgGCGCggCGGGCCGc--- -3'
miRNA:   3'- -GGGUC-CCGa----G-CGUGa-GCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 132096 0.66 0.762368
Target:  5'- aCCCGGaGCgCGUGCUcCGGGCCGc--- -3'
miRNA:   3'- -GGGUCcCGaGCGUGA-GCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 45504 0.66 0.790372
Target:  5'- gCCCGGGGCgggCGCcgccGC-CGGGCg----- -3'
miRNA:   3'- -GGGUCCCGa--GCG----UGaGCCCGguuauu -5'
6685 3' -58.2 NC_001847.1 + 78232 0.66 0.790372
Target:  5'- uCCCGggcGGGUUCGCcCUgGaGGCCGAc-- -3'
miRNA:   3'- -GGGU---CCCGAGCGuGAgC-CCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 13118 0.66 0.781169
Target:  5'- gCCGGGGCgCGCGggCGGcGCCGc--- -3'
miRNA:   3'- gGGUCCCGaGCGUgaGCC-CGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 126391 0.66 0.775582
Target:  5'- cCCCGGGGCggaUGCGCUUaccuugccuuugccgGGGCUGGg-- -3'
miRNA:   3'- -GGGUCCCGa--GCGUGAG---------------CCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 34284 0.67 0.70348
Target:  5'- gCUGGGcGC-CGCGCUCGcGGCCGu--- -3'
miRNA:   3'- gGGUCC-CGaGCGUGAGC-CCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 61838 0.67 0.6934
Target:  5'- gCCAGGGUggugUCGUACUCcagGGGCgGGUc- -3'
miRNA:   3'- gGGUCCCG----AGCGUGAG---CCCGgUUAuu -5'
6685 3' -58.2 NC_001847.1 + 84641 0.66 0.771831
Target:  5'- gCCGcGGCUgcugCGCGCUCGGG-CGAUGu -3'
miRNA:   3'- gGGUcCCGA----GCGUGAGCCCgGUUAUu -5'
6685 3' -58.2 NC_001847.1 + 34597 0.67 0.6934
Target:  5'- gCCCGGGcGCUgGCGCggCGGcgcGCCGAg-- -3'
miRNA:   3'- -GGGUCC-CGAgCGUGa-GCC---CGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 104386 0.68 0.683268
Target:  5'- gCCAGcacGGCgcgCGCcagcgcgccGCUCGGGCCAGc-- -3'
miRNA:   3'- gGGUC---CCGa--GCG---------UGAGCCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 73140 0.68 0.673094
Target:  5'- gCCgCAGGGCccCGCGCcgcucuUCGGGCCc---- -3'
miRNA:   3'- -GG-GUCCCGa-GCGUG------AGCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 6696 0.68 0.652654
Target:  5'- gCC-GGGCgCGCGCgcaGGGCCGAg-- -3'
miRNA:   3'- gGGuCCCGaGCGUGag-CCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 134864 0.69 0.621891
Target:  5'- gCCCGcgcGGGCUCgGCggcccccggGCUCGGGCCc---- -3'
miRNA:   3'- -GGGU---CCCGAG-CG---------UGAGCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 98047 0.69 0.611642
Target:  5'- aCCAgcGGGCcgcucucCGCGCUCaggcGGGCCAGUAc -3'
miRNA:   3'- gGGU--CCCGa------GCGUGAG----CCCGGUUAUu -5'
6685 3' -58.2 NC_001847.1 + 134913 0.67 0.6934
Target:  5'- gUCGGGGCgcgaggccCGgGCUCGGGCCc---- -3'
miRNA:   3'- gGGUCCCGa-------GCgUGAGCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 13454 0.66 0.771831
Target:  5'- aUCUAgcGGGCgCGCaccuGCUCGGGCCGc--- -3'
miRNA:   3'- -GGGU--CCCGaGCG----UGAGCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 114089 0.66 0.771831
Target:  5'- cCCCAGGGcCUCagggccgggGguCUCGGGgCAAg-- -3'
miRNA:   3'- -GGGUCCC-GAG---------CguGAGCCCgGUUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.