Results 101 - 120 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6685 | 3' | -58.2 | NC_001847.1 | + | 132096 | 0.66 | 0.762368 |
Target: 5'- aCCCGGaGCgCGUGCUcCGGGCCGc--- -3' miRNA: 3'- -GGGUCcCGaGCGUGA-GCCCGGUuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 114089 | 0.66 | 0.771831 |
Target: 5'- cCCCAGGGcCUCagggccgggGguCUCGGGgCAAg-- -3' miRNA: 3'- -GGGUCCC-GAG---------CguGAGCCCgGUUauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 13454 | 0.66 | 0.771831 |
Target: 5'- aUCUAgcGGGCgCGCaccuGCUCGGGCCGc--- -3' miRNA: 3'- -GGGU--CCCGaGCG----UGAGCCCGGUuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 84641 | 0.66 | 0.771831 |
Target: 5'- gCCGcGGCUgcugCGCGCUCGGG-CGAUGu -3' miRNA: 3'- gGGUcCCGA----GCGUGAGCCCgGUUAUu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 126391 | 0.66 | 0.775582 |
Target: 5'- cCCCGGGGCggaUGCGCUUaccuugccuuugccgGGGCUGGg-- -3' miRNA: 3'- -GGGUCCCGa--GCGUGAG---------------CCCGGUUauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 24975 | 0.67 | 0.743104 |
Target: 5'- gUCGGGcGCUCGCugUCGcuguugauGGCCAu--- -3' miRNA: 3'- gGGUCC-CGAGCGugAGC--------CCGGUuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 106933 | 0.67 | 0.743104 |
Target: 5'- uCCCGGGcCUCGCccccaucgucCUCGGGCCc---- -3' miRNA: 3'- -GGGUCCcGAGCGu---------GAGCCCGGuuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 63273 | 0.67 | 0.733321 |
Target: 5'- ---cGGGCcgCGCGCUCGcGGCCGc--- -3' miRNA: 3'- ggguCCCGa-GCGUGAGC-CCGGUuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 61838 | 0.67 | 0.6934 |
Target: 5'- gCCAGGGUggugUCGUACUCcagGGGCgGGUc- -3' miRNA: 3'- gGGUCCCG----AGCGUGAG---CCCGgUUAuu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 34284 | 0.67 | 0.70348 |
Target: 5'- gCUGGGcGC-CGCGCUCGcGGCCGu--- -3' miRNA: 3'- gGGUCC-CGaGCGUGAGC-CCGGUuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 70380 | 0.67 | 0.70348 |
Target: 5'- gCCGGGGCgcgagcUCGCGCU--GGCCAAg-- -3' miRNA: 3'- gGGUCCCG------AGCGUGAgcCCGGUUauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 105797 | 0.67 | 0.70348 |
Target: 5'- gCCGGGGCcgCGCGCU-GGaGCCGc--- -3' miRNA: 3'- gGGUCCCGa-GCGUGAgCC-CGGUuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 83036 | 0.67 | 0.70348 |
Target: 5'- gCCCGcGGCcgcuagUGCGCUUGGGCCGc--- -3' miRNA: 3'- -GGGUcCCGa-----GCGUGAGCCCGGUuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 106624 | 0.67 | 0.7135 |
Target: 5'- gCCgGGcGGCggcggCGCGCUgcCGGGCCAc--- -3' miRNA: 3'- -GGgUC-CCGa----GCGUGA--GCCCGGUuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 2889 | 0.67 | 0.7135 |
Target: 5'- gCCGGGuGCgUCGCcguUCGGGCCGGa-- -3' miRNA: 3'- gGGUCC-CG-AGCGug-AGCCCGGUUauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 113393 | 0.67 | 0.7135 |
Target: 5'- gCCGGcGGCcccccCGCGCgcgCGGGCCGGc-- -3' miRNA: 3'- gGGUC-CCGa----GCGUGa--GCCCGGUUauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 111288 | 0.67 | 0.72345 |
Target: 5'- gCCgGGGGCg-GCGCUC-GGCCGGg-- -3' miRNA: 3'- -GGgUCCCGagCGUGAGcCCGGUUauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 81167 | 0.67 | 0.730368 |
Target: 5'- gCCCgccgcgccgcucggAGGGCUCGCGg-CGGcGCCAGc-- -3' miRNA: 3'- -GGG--------------UCCCGAGCGUgaGCC-CGGUUauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 28100 | 0.67 | 0.733321 |
Target: 5'- gCCCGGGGC-CGCGCgCGacaccGCCGAUu- -3' miRNA: 3'- -GGGUCCCGaGCGUGaGCc----CGGUUAuu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 19428 | 0.67 | 0.733321 |
Target: 5'- gCCCGuGGCggcaagCGCACaCGGGCCGc--- -3' miRNA: 3'- -GGGUcCCGa-----GCGUGaGCCCGGUuauu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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