Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6685 | 5' | -46.6 | NC_001847.1 | + | 126963 | 1.1 | 0.015188 |
Target: 5'- aACUUAUUGAGCUUUGUGCGAACGCUGg -3' miRNA: 3'- -UGAAUAACUCGAAACACGCUUGCGAC- -5' |
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6685 | 5' | -46.6 | NC_001847.1 | + | 126851 | 1.05 | 0.032172 |
Target: 5'- uACUUAUUGAGUUUUGUGCGAACGCUGg -3' miRNA: 3'- -UGAAUAACUCGAAACACGCUUGCGAC- -5' |
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6685 | 5' | -46.6 | NC_001847.1 | + | 69021 | 0.69 | 0.996075 |
Target: 5'- -----aUGAGCUgcugcgGUGCGucGCGCUGu -3' miRNA: 3'- ugaauaACUCGAaa----CACGCu-UGCGAC- -5' |
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6685 | 5' | -46.6 | NC_001847.1 | + | 7242 | 0.68 | 0.998703 |
Target: 5'- gGCUgGUcGGGUggcUGUGCGGGCGCg- -3' miRNA: 3'- -UGAaUAaCUCGaa-ACACGCUUGCGac -5' |
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6685 | 5' | -46.6 | NC_001847.1 | + | 70526 | 0.68 | 0.998703 |
Target: 5'- gGCUgc-UGGGCggcGUGCuGGCGCUGg -3' miRNA: 3'- -UGAauaACUCGaaaCACGcUUGCGAC- -5' |
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6685 | 5' | -46.6 | NC_001847.1 | + | 15048 | 0.67 | 0.998944 |
Target: 5'- ------cGAGC--UGUGCGAGCGCc- -3' miRNA: 3'- ugaauaaCUCGaaACACGCUUGCGac -5' |
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6685 | 5' | -46.6 | NC_001847.1 | + | 96346 | 0.67 | 0.998944 |
Target: 5'- ------cGGGCUggcGUGCGAcGCGCUGc -3' miRNA: 3'- ugaauaaCUCGAaa-CACGCU-UGCGAC- -5' |
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6685 | 5' | -46.6 | NC_001847.1 | + | 2190 | 0.67 | 0.999312 |
Target: 5'- -----cUGGGCggcGUGCGGGCGCa- -3' miRNA: 3'- ugaauaACUCGaaaCACGCUUGCGac -5' |
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6685 | 5' | -46.6 | NC_001847.1 | + | 32809 | 0.67 | 0.999312 |
Target: 5'- cGCUcuUUGAGCgc-GcGCGAGCGCg- -3' miRNA: 3'- -UGAauAACUCGaaaCaCGCUUGCGac -5' |
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6685 | 5' | -46.6 | NC_001847.1 | + | 110360 | 0.69 | 0.996075 |
Target: 5'- ------aGGGCgUUGUGUGGACGCUc -3' miRNA: 3'- ugaauaaCUCGaAACACGCUUGCGAc -5' |
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6685 | 5' | -46.6 | NC_001847.1 | + | 11762 | 0.73 | 0.959535 |
Target: 5'- ------cGAGgCUUUGUGUGAGCGCUc -3' miRNA: 3'- ugaauaaCUC-GAAACACGCUUGCGAc -5' |
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6685 | 5' | -46.6 | NC_001847.1 | + | 24038 | 1.05 | 0.032172 |
Target: 5'- uACUUAUUGAGUUUUGUGCGAACGCUGg -3' miRNA: 3'- -UGAAUAACUCGAAACACGCUUGCGAC- -5' |
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6685 | 5' | -46.6 | NC_001847.1 | + | 24150 | 1.1 | 0.015188 |
Target: 5'- aACUUAUUGAGCUUUGUGCGAACGCUGg -3' miRNA: 3'- -UGAAUAACUCGAAACACGCUUGCGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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