Results 1 - 20 of 410 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6686 | 3' | -47.4 | NC_001847.1 | + | 69425 | 0.66 | 0.999389 |
Target: 5'- uUCCUGC-GGCuCAGcGcgGCGGUGGCg -3' miRNA: 3'- -GGGGCGaCCGcGUUuUuaUGUUAUCG- -5' |
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6686 | 3' | -47.4 | NC_001847.1 | + | 44 | 0.66 | 0.999389 |
Target: 5'- uUCCGCgcGGCGCGugcauUGCGGcgGGCg -3' miRNA: 3'- gGGGCGa-CCGCGUuuuu-AUGUUa-UCG- -5' |
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6686 | 3' | -47.4 | NC_001847.1 | + | 60742 | 0.66 | 0.999389 |
Target: 5'- --gCGCgGGCGCGGc---GCGGUGGCg -3' miRNA: 3'- gggGCGaCCGCGUUuuuaUGUUAUCG- -5' |
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6686 | 3' | -47.4 | NC_001847.1 | + | 50757 | 0.66 | 0.999612 |
Target: 5'- gCCCCGguUUGGCGCGccAAcGCGG-AGCc -3' miRNA: 3'- -GGGGC--GACCGCGUuuUUaUGUUaUCG- -5' |
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6686 | 3' | -47.4 | NC_001847.1 | + | 31441 | 0.66 | 0.999389 |
Target: 5'- aCgUCGCUGGCGCu--GGUGaucgugGGCg -3' miRNA: 3'- -GgGGCGACCGCGuuuUUAUguua--UCG- -5' |
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6686 | 3' | -47.4 | NC_001847.1 | + | 114859 | 0.66 | 0.999511 |
Target: 5'- aCCaaaCGCcGGCGCu-GGGUGCGgccuuuaaaggAUAGCa -3' miRNA: 3'- -GGg--GCGaCCGCGuuUUUAUGU-----------UAUCG- -5' |
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6686 | 3' | -47.4 | NC_001847.1 | + | 60842 | 0.66 | 0.999511 |
Target: 5'- gCCCGC-GGCGCugcgcgGCGccagGGCg -3' miRNA: 3'- gGGGCGaCCGCGuuuuuaUGUua--UCG- -5' |
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6686 | 3' | -47.4 | NC_001847.1 | + | 51963 | 0.66 | 0.999389 |
Target: 5'- aCCCCGC-GGCagugauGCAcuGGGUGCGccGGCg -3' miRNA: 3'- -GGGGCGaCCG------CGUu-UUUAUGUuaUCG- -5' |
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6686 | 3' | -47.4 | NC_001847.1 | + | 33962 | 0.66 | 0.999612 |
Target: 5'- aCCCgagcgCGCUGGCGCcgggc-GCGcUGGCc -3' miRNA: 3'- -GGG-----GCGACCGCGuuuuuaUGUuAUCG- -5' |
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6686 | 3' | -47.4 | NC_001847.1 | + | 48127 | 0.66 | 0.999511 |
Target: 5'- gUCCCGCgaGGCGCGGcccAGGUAaccgccgGGCc -3' miRNA: 3'- -GGGGCGa-CCGCGUU---UUUAUguua---UCG- -5' |
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6686 | 3' | -47.4 | NC_001847.1 | + | 124428 | 0.66 | 0.999489 |
Target: 5'- aCUCGCUGGCgGCGcuuggccgGCGcgGGCc -3' miRNA: 3'- gGGGCGACCG-CGUuuuua---UGUuaUCG- -5' |
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6686 | 3' | -47.4 | NC_001847.1 | + | 18120 | 0.66 | 0.999511 |
Target: 5'- cCCCCGCcGG-GCAG----ACAggAGCg -3' miRNA: 3'- -GGGGCGaCCgCGUUuuuaUGUuaUCG- -5' |
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6686 | 3' | -47.4 | NC_001847.1 | + | 30382 | 0.66 | 0.999389 |
Target: 5'- --gCGCUGGUGCGggcgcAGAcgGCGcUGGCg -3' miRNA: 3'- gggGCGACCGCGU-----UUUuaUGUuAUCG- -5' |
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6686 | 3' | -47.4 | NC_001847.1 | + | 32326 | 0.66 | 0.999389 |
Target: 5'- aCCCGCUGGaacaCGCGAu----CGcgGGCc -3' miRNA: 3'- gGGGCGACC----GCGUUuuuauGUuaUCG- -5' |
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6686 | 3' | -47.4 | NC_001847.1 | + | 35302 | 0.66 | 0.999511 |
Target: 5'- gCCCCGCcgagcGGCGCGcgcuGGAaGCG--GGCg -3' miRNA: 3'- -GGGGCGa----CCGCGUu---UUUaUGUuaUCG- -5' |
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6686 | 3' | -47.4 | NC_001847.1 | + | 54580 | 0.66 | 0.999389 |
Target: 5'- gCCCCGCgGGCu--GGGcgGCGcUGGCg -3' miRNA: 3'- -GGGGCGaCCGcguUUUuaUGUuAUCG- -5' |
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6686 | 3' | -47.4 | NC_001847.1 | + | 43276 | 0.66 | 0.999603 |
Target: 5'- aCCUGCUGcgacgccgcgcguGCGCGggcugcGGAGUACGA-AGCg -3' miRNA: 3'- gGGGCGAC-------------CGCGU------UUUUAUGUUaUCG- -5' |
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6686 | 3' | -47.4 | NC_001847.1 | + | 2611 | 0.66 | 0.999612 |
Target: 5'- gCCCGCc-GCGCcGGAGGUGCuucGGCg -3' miRNA: 3'- gGGGCGacCGCG-UUUUUAUGuuaUCG- -5' |
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6686 | 3' | -47.4 | NC_001847.1 | + | 41023 | 0.66 | 0.999511 |
Target: 5'- gUCCUGCaacgGGCGCGccGcgGCGuuUAGCa -3' miRNA: 3'- -GGGGCGa---CCGCGUuuUuaUGUu-AUCG- -5' |
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6686 | 3' | -47.4 | NC_001847.1 | + | 134512 | 0.66 | 0.999389 |
Target: 5'- gCCUCGggGGCGgGGGGAgGCGcgGGCc -3' miRNA: 3'- -GGGGCgaCCGCgUUUUUaUGUuaUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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