miRNA display CGI


Results 61 - 80 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6686 5' -50.9 NC_001847.1 + 23773 0.67 0.981082
Target:  5'- -gGCCAgcGGA-----UGCCCGgGCGc -3'
miRNA:   3'- ggCGGUaaCCUaaaaaACGGGCgCGC- -5'
6686 5' -50.9 NC_001847.1 + 11244 0.67 0.981082
Target:  5'- gCCGCCGUUuucgGGAagc-UUGCCgCGgGCGc -3'
miRNA:   3'- -GGCGGUAA----CCUaaaaAACGG-GCgCGC- -5'
6686 5' -50.9 NC_001847.1 + 134180 0.67 0.981082
Target:  5'- cCCGCCGgcccGGG-----UGCCgGCGCa -3'
miRNA:   3'- -GGCGGUaa--CCUaaaaaACGGgCGCGc -5'
6686 5' -50.9 NC_001847.1 + 38624 0.67 0.981724
Target:  5'- gCGCCGUacUGGAccacggaaguccaUGCCCGcCGCGu -3'
miRNA:   3'- gGCGGUA--ACCUaaaaa--------ACGGGC-GCGC- -5'
6686 5' -50.9 NC_001847.1 + 37600 0.67 0.98316
Target:  5'- gCgGCCGggGGccg----GCCCGCGCu -3'
miRNA:   3'- -GgCGGUaaCCuaaaaaaCGGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 15400 0.67 0.976359
Target:  5'- uCCGCCAgcUGGGcg----GCCCuggaGCGCGg -3'
miRNA:   3'- -GGCGGUa-ACCUaaaaaaCGGG----CGCGC- -5'
6686 5' -50.9 NC_001847.1 + 100813 0.67 0.979746
Target:  5'- uUGCCAUUGcGGccgaccucgGCCCGgGCGg -3'
miRNA:   3'- gGCGGUAAC-CUaaaaaa---CGGGCgCGC- -5'
6686 5' -50.9 NC_001847.1 + 43381 0.67 0.978818
Target:  5'- gCCGCCGacGGAgc----GCCCGCGg- -3'
miRNA:   3'- -GGCGGUaaCCUaaaaaaCGGGCGCgc -5'
6686 5' -50.9 NC_001847.1 + 77643 0.67 0.978818
Target:  5'- gCCGCCcgUGGAg-----GCCuuCGaCGCGg -3'
miRNA:   3'- -GGCGGuaACCUaaaaaaCGG--GC-GCGC- -5'
6686 5' -50.9 NC_001847.1 + 67834 0.67 0.98316
Target:  5'- aCGCCGgcGGGgc---UGCCgGCGCu -3'
miRNA:   3'- gGCGGUaaCCUaaaaaACGGgCGCGc -5'
6686 5' -50.9 NC_001847.1 + 28622 0.67 0.976359
Target:  5'- gCCGCCcgaGGcgcuagUGCCCGCGgGu -3'
miRNA:   3'- -GGCGGuaaCCuaaaaaACGGGCGCgC- -5'
6686 5' -50.9 NC_001847.1 + 124535 0.67 0.975054
Target:  5'- gCGCCAgcagGGcgcgggccggcgccgGCCCGCGCGc -3'
miRNA:   3'- gGCGGUaa--CCuaaaaaa--------CGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 103088 0.67 0.975319
Target:  5'- -aGCCcg-GGGgccgccgaGCCCGCGCGg -3'
miRNA:   3'- ggCGGuaaCCUaaaaaa--CGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 60476 0.67 0.976102
Target:  5'- uCCGCCA-UGGcgccgccgcuuugUGCgCGCGCGg -3'
miRNA:   3'- -GGCGGUaACCuaaaaa-------ACGgGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 26957 0.67 0.976359
Target:  5'- gUCGCCggaGUUGGAaaugaggUGCgCGCGCa -3'
miRNA:   3'- -GGCGG---UAACCUaaaaa--ACGgGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 33657 0.67 0.976359
Target:  5'- gCGCgCGcgUGGccgcg--GCCCGCGCGg -3'
miRNA:   3'- gGCG-GUa-ACCuaaaaaaCGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 102913 0.67 0.976359
Target:  5'- uCCGCCccUGGGUccggcGCCCcGCGCc -3'
miRNA:   3'- -GGCGGuaACCUAaaaaaCGGG-CGCGc -5'
6686 5' -50.9 NC_001847.1 + 131826 0.67 0.977858
Target:  5'- gCGCCGgcGGcagcggcGCCCGCGCc -3'
miRNA:   3'- gGCGGUaaCCuaaaaaaCGGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 935 0.67 0.978101
Target:  5'- aCCGCCGcccucg-----GCCCGCGCGc -3'
miRNA:   3'- -GGCGGUaaccuaaaaaaCGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 88227 0.67 0.985061
Target:  5'- gCGCCucgccGGAgccgagGCCgGCGCGg -3'
miRNA:   3'- gGCGGuaa--CCUaaaaaaCGGgCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.