Results 81 - 100 of 196 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6686 | 5' | -50.9 | NC_001847.1 | + | 128857 | 0.67 | 0.98316 |
Target: 5'- cUCGCCGa-GGuccgc-UGCCUGCGCGa -3' miRNA: 3'- -GGCGGUaaCCuaaaaaACGGGCGCGC- -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 121669 | 0.67 | 0.98316 |
Target: 5'- gCCGCCGcugUGGGgugcg-GCCCGaGCa -3' miRNA: 3'- -GGCGGUa--ACCUaaaaaaCGGGCgCGc -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 67834 | 0.67 | 0.98316 |
Target: 5'- aCGCCGgcGGGgc---UGCCgGCGCu -3' miRNA: 3'- gGCGGUaaCCUaaaaaACGGgCGCGc -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 88227 | 0.67 | 0.985061 |
Target: 5'- gCGCCucgccGGAgccgagGCCgGCGCGg -3' miRNA: 3'- gGCGGuaa--CCUaaaaaaCGGgCGCGC- -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 26957 | 0.67 | 0.976359 |
Target: 5'- gUCGCCggaGUUGGAaaugaggUGCgCGCGCa -3' miRNA: 3'- -GGCGG---UAACCUaaaaa--ACGgGCGCGc -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 15400 | 0.67 | 0.976359 |
Target: 5'- uCCGCCAgcUGGGcg----GCCCuggaGCGCGg -3' miRNA: 3'- -GGCGGUa-ACCUaaaaaaCGGG----CGCGC- -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 60476 | 0.67 | 0.976102 |
Target: 5'- uCCGCCA-UGGcgccgccgcuuugUGCgCGCGCGg -3' miRNA: 3'- -GGCGGUaACCuaaaaa-------ACGgGCGCGC- -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 103088 | 0.67 | 0.975319 |
Target: 5'- -aGCCcg-GGGgccgccgaGCCCGCGCGg -3' miRNA: 3'- ggCGGuaaCCUaaaaaa--CGGGCGCGC- -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 124535 | 0.67 | 0.975054 |
Target: 5'- gCGCCAgcagGGcgcgggccggcgccgGCCCGCGCGc -3' miRNA: 3'- gGCGGUaa--CCuaaaaaa--------CGGGCGCGC- -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 102913 | 0.67 | 0.976359 |
Target: 5'- uCCGCCccUGGGUccggcGCCCcGCGCc -3' miRNA: 3'- -GGCGGuaACCUAaaaaaCGGG-CGCGc -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 131826 | 0.67 | 0.977858 |
Target: 5'- gCGCCGgcGGcagcggcGCCCGCGCc -3' miRNA: 3'- gGCGGUaaCCuaaaaaaCGGGCGCGc -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 935 | 0.67 | 0.978101 |
Target: 5'- aCCGCCGcccucg-----GCCCGCGCGc -3' miRNA: 3'- -GGCGGUaaccuaaaaaaCGGGCGCGC- -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 77643 | 0.67 | 0.978818 |
Target: 5'- gCCGCCcgUGGAg-----GCCuuCGaCGCGg -3' miRNA: 3'- -GGCGGuaACCUaaaaaaCGG--GC-GCGC- -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 28622 | 0.67 | 0.976359 |
Target: 5'- gCCGCCcgaGGcgcuagUGCCCGCGgGu -3' miRNA: 3'- -GGCGGuaaCCuaaaaaACGGGCGCgC- -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 77089 | 0.68 | 0.970825 |
Target: 5'- gCGCCAaucGGcg-----GCCCGCGCGc -3' miRNA: 3'- gGCGGUaa-CCuaaaaaaCGGGCGCGC- -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 47712 | 0.68 | 0.97342 |
Target: 5'- gCCGCCg--GGAacgccagcccgucGCCCGCGCa -3' miRNA: 3'- -GGCGGuaaCCUaaaaaa-------CGGGCGCGc -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 87250 | 0.68 | 0.974787 |
Target: 5'- aCCGCCGcgGGAUUc--UGCCgcuuucucgcggacgUGCGCGc -3' miRNA: 3'- -GGCGGUaaCCUAAaaaACGG---------------GCGCGC- -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 130521 | 0.68 | 0.973697 |
Target: 5'- gCGCCGgcGGGcc----GCCCGCGCc -3' miRNA: 3'- gGCGGUaaCCUaaaaaaCGGGCGCGc -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 61393 | 0.68 | 0.973697 |
Target: 5'- gCCGCCGcccggcgcUUGGAac---UGCCCuCGCGg -3' miRNA: 3'- -GGCGGU--------AACCUaaaaaACGGGcGCGC- -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 133728 | 0.68 | 0.970825 |
Target: 5'- cCCGCCAccGcGGUgcccgUGCcgCCGCGCGa -3' miRNA: 3'- -GGCGGUaaC-CUAaaaa-ACG--GGCGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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