miRNA display CGI


Results 61 - 80 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6686 5' -50.9 NC_001847.1 + 94248 0.69 0.953057
Target:  5'- gCGCCG-UGGAgcg---GCUCGCGCc -3'
miRNA:   3'- gGCGGUaACCUaaaaaaCGGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 39295 0.69 0.953057
Target:  5'- aCCGCCuagcUUGGA------GCCCGUGCc -3'
miRNA:   3'- -GGCGGu---AACCUaaaaaaCGGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 108533 0.69 0.951377
Target:  5'- gCGCCug-GGAgggcuuaccUGCCCGCGgGg -3'
miRNA:   3'- gGCGGuaaCCUaaaaa----ACGGGCGCgC- -5'
6686 5' -50.9 NC_001847.1 + 93823 0.69 0.944257
Target:  5'- cCCGC---UGGAc--UUUGCgCCGCGCGa -3'
miRNA:   3'- -GGCGguaACCUaaaAAACG-GGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 17689 0.69 0.944257
Target:  5'- aCCGCCAgUGGcgUUgucgGCCaCGcCGCa -3'
miRNA:   3'- -GGCGGUaACCuaAAaaa-CGG-GC-GCGc -5'
6686 5' -50.9 NC_001847.1 + 132894 0.69 0.941421
Target:  5'- gCCGCCcggGGAcuaccacacGCCCGCGCc -3'
miRNA:   3'- -GGCGGuaaCCUaaaaaa---CGGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 101378 0.69 0.939479
Target:  5'- gCGCCGcgGGGgc---UGCCCGCgGCGc -3'
miRNA:   3'- gGCGGUaaCCUaaaaaACGGGCG-CGC- -5'
6686 5' -50.9 NC_001847.1 + 46765 0.69 0.938987
Target:  5'- cCCGCCGcgcGGGgccgguccgccgcGCCCGCGCGc -3'
miRNA:   3'- -GGCGGUaa-CCUaaaaaa-------CGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 27410 0.69 0.954698
Target:  5'- cCCGCCGgcccaaGGGUUguagccccggggUGCCCGCccGCGa -3'
miRNA:   3'- -GGCGGUaa----CCUAAaaa---------ACGGGCG--CGC- -5'
6686 5' -50.9 NC_001847.1 + 92391 0.69 0.958245
Target:  5'- -gGCCGUccUGGAUcUgcuguccgccccgccGCCCGCGCGg -3'
miRNA:   3'- ggCGGUA--ACCUAaAaaa------------CGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 52260 0.69 0.938492
Target:  5'- gCCGCUucgUGcucgcg-UGCCCGCGCGc -3'
miRNA:   3'- -GGCGGua-ACcuaaaaaACGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 88558 0.69 0.948783
Target:  5'- gCGCCGgcGGGgcugacGCCCGgCGCGg -3'
miRNA:   3'- gGCGGUaaCCUaaaaaaCGGGC-GCGC- -5'
6686 5' -50.9 NC_001847.1 + 87250 0.68 0.974787
Target:  5'- aCCGCCGcgGGAUUc--UGCCgcuuucucgcggacgUGCGCGc -3'
miRNA:   3'- -GGCGGUaaCCUAAaaaACGG---------------GCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 130521 0.68 0.973697
Target:  5'- gCGCCGgcGGGcc----GCCCGCGCc -3'
miRNA:   3'- gGCGGUaaCCUaaaaaaCGGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 61393 0.68 0.973697
Target:  5'- gCCGCCGcccggcgcUUGGAac---UGCCCuCGCGg -3'
miRNA:   3'- -GGCGGU--------AACCUaaaaaACGGGcGCGC- -5'
6686 5' -50.9 NC_001847.1 + 47712 0.68 0.97342
Target:  5'- gCCGCCg--GGAacgccagcccgucGCCCGCGCa -3'
miRNA:   3'- -GGCGGuaaCCUaaaaaa-------CGGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 133728 0.68 0.970825
Target:  5'- cCCGCCAccGcGGUgcccgUGCcgCCGCGCGa -3'
miRNA:   3'- -GGCGGUaaC-CUAaaaa-ACG--GGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 77089 0.68 0.970825
Target:  5'- gCGCCAaucGGcg-----GCCCGCGCGc -3'
miRNA:   3'- gGCGGUaa-CCuaaaaaaCGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 69528 0.68 0.967734
Target:  5'- aCGUCAUcGGGUUUUUcgcGCCCcggGCGUGg -3'
miRNA:   3'- gGCGGUAaCCUAAAAAa--CGGG---CGCGC- -5'
6686 5' -50.9 NC_001847.1 + 131666 0.68 0.967734
Target:  5'- gCCGCCGgucggGGAcgccaUGgCCGCGCa -3'
miRNA:   3'- -GGCGGUaa---CCUaaaaaACgGGCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.