miRNA display CGI


Results 81 - 100 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6686 5' -50.9 NC_001847.1 + 130934 0.68 0.964418
Target:  5'- aCCGCgCA--GGGcUUUggcUGCCUGCGCGc -3'
miRNA:   3'- -GGCG-GUaaCCUaAAAa--ACGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 49992 0.68 0.964418
Target:  5'- uCCGCgAgaGGA------GCCCGCGCGc -3'
miRNA:   3'- -GGCGgUaaCCUaaaaaaCGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 96878 0.68 0.965771
Target:  5'- uCCGCgCuggGGAgggaccgccgUGCUCGCGCGg -3'
miRNA:   3'- -GGCG-GuaaCCUaaaaa-----ACGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 29902 0.68 0.966435
Target:  5'- gCCGCCcgaagUGcGcccgccugUGCCCGCGCGc -3'
miRNA:   3'- -GGCGGua---AC-Cuaaaaa--ACGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 28853 0.68 0.967734
Target:  5'- gCCGCCGgucggGGAcgccaUGgCCGCGCa -3'
miRNA:   3'- -GGCGGUaa---CCUaaaaaACgGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 100797 0.68 0.967734
Target:  5'- gCCGCCGUcaUGGcgUUUUUuagugcGCUCGcCGCa -3'
miRNA:   3'- -GGCGGUA--ACCuaAAAAA------CGGGC-GCGc -5'
6686 5' -50.9 NC_001847.1 + 116902 0.68 0.967734
Target:  5'- gCgGCCAUcuUGGAUcca---CCCGCGCGc -3'
miRNA:   3'- -GgCGGUA--ACCUAaaaaacGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 87562 0.68 0.967734
Target:  5'- aCCGCCAcuacgccucGGGcgaggUGCCCGUGCu -3'
miRNA:   3'- -GGCGGUaa-------CCUaaaaaACGGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 69528 0.68 0.967734
Target:  5'- aCGUCAUcGGGUUUUUcgcGCCCcggGCGUGg -3'
miRNA:   3'- gGCGGUAaCCUAAAAAa--CGGG---CGCGC- -5'
6686 5' -50.9 NC_001847.1 + 49531 0.68 0.967734
Target:  5'- gCGCCGgcgcuUUGGcUUUagcgccUUUGCCgGCGCGc -3'
miRNA:   3'- gGCGGU-----AACCuAAA------AAACGGgCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 131666 0.68 0.967734
Target:  5'- gCCGCCGgucggGGAcgccaUGgCCGCGCa -3'
miRNA:   3'- -GGCGGUaa---CCUaaaaaACgGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 77089 0.68 0.970825
Target:  5'- gCGCCAaucGGcg-----GCCCGCGCGc -3'
miRNA:   3'- gGCGGUaa-CCuaaaaaaCGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 133728 0.68 0.970825
Target:  5'- cCCGCCAccGcGGUgcccgUGCcgCCGCGCGa -3'
miRNA:   3'- -GGCGGUaaC-CUAaaaa-ACG--GGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 19654 0.68 0.971709
Target:  5'- gCGCCcuuccaGGGgcaagcccagacgUGCCCGCGCGg -3'
miRNA:   3'- gGCGGuaa---CCUaaaaa--------ACGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 96864 0.68 0.972288
Target:  5'- gCCGCCAccugccgcc--GCCCGCGCGu -3'
miRNA:   3'- -GGCGGUaaccuaaaaaaCGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 47712 0.68 0.97342
Target:  5'- gCCGCCg--GGAacgccagcccgucGCCCGCGCa -3'
miRNA:   3'- -GGCGGuaaCCUaaaaaa-------CGGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 61393 0.68 0.973697
Target:  5'- gCCGCCGcccggcgcUUGGAac---UGCCCuCGCGg -3'
miRNA:   3'- -GGCGGU--------AACCUaaaaaACGGGcGCGC- -5'
6686 5' -50.9 NC_001847.1 + 59564 0.68 0.973697
Target:  5'- -gGCC--UGGAgcacuuUUUUUUGCCgGCGCu -3'
miRNA:   3'- ggCGGuaACCU------AAAAAACGGgCGCGc -5'
6686 5' -50.9 NC_001847.1 + 27708 0.68 0.973697
Target:  5'- gCGCCGgcGGGcc----GCCCGCGCc -3'
miRNA:   3'- gGCGGUaaCCUaaaaaaCGGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 103961 0.68 0.973697
Target:  5'- aCCGUCGaUGGcgUcggcGCCCaGCGCGg -3'
miRNA:   3'- -GGCGGUaACCuaAaaaaCGGG-CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.