Results 61 - 80 of 196 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6686 | 5' | -50.9 | NC_001847.1 | + | 121669 | 0.67 | 0.98316 |
Target: 5'- gCCGCCGcugUGGGgugcg-GCCCGaGCa -3' miRNA: 3'- -GGCGGUa--ACCUaaaaaaCGGGCgCGc -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 67834 | 0.67 | 0.98316 |
Target: 5'- aCGCCGgcGGGgc---UGCCgGCGCu -3' miRNA: 3'- gGCGGUaaCCUaaaaaACGGgCGCGc -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 37600 | 0.67 | 0.98316 |
Target: 5'- gCgGCCGggGGccg----GCCCGCGCu -3' miRNA: 3'- -GgCGGUaaCCuaaaaaaCGGGCGCGc -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 80318 | 0.67 | 0.982555 |
Target: 5'- gCGCgGUUGuccaccaccgUGCCCGCGCu -3' miRNA: 3'- gGCGgUAACcuaaaaa---ACGGGCGCGc -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 38624 | 0.67 | 0.981724 |
Target: 5'- gCGCCGUacUGGAccacggaaguccaUGCCCGcCGCGu -3' miRNA: 3'- gGCGGUA--ACCUaaaaa--------ACGGGC-GCGC- -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 39479 | 0.67 | 0.981082 |
Target: 5'- gUGCCA-UGGAgacca-GCCCGcCGCGc -3' miRNA: 3'- gGCGGUaACCUaaaaaaCGGGC-GCGC- -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 31367 | 0.67 | 0.981082 |
Target: 5'- cCCGCCGgcccGGG-----UGCCgGCGCa -3' miRNA: 3'- -GGCGGUaa--CCUaaaaaACGGgCGCGc -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 134180 | 0.67 | 0.981082 |
Target: 5'- cCCGCCGgcccGGG-----UGCCgGCGCa -3' miRNA: 3'- -GGCGGUaa--CCUaaaaaACGGgCGCGc -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 11244 | 0.67 | 0.981082 |
Target: 5'- gCCGCCGUUuucgGGAagc-UUGCCgCGgGCGc -3' miRNA: 3'- -GGCGGUAA----CCUaaaaAACGG-GCgCGC- -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 81444 | 0.67 | 0.981082 |
Target: 5'- gCCGCCGgcGGcgc----GCUCGCGCGc -3' miRNA: 3'- -GGCGGUaaCCuaaaaaaCGGGCGCGC- -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 43501 | 0.67 | 0.981082 |
Target: 5'- gCCGCCGUcgaucgcuacUGGGcg----GCgCGCGCGg -3' miRNA: 3'- -GGCGGUA----------ACCUaaaaaaCGgGCGCGC- -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 23773 | 0.67 | 0.981082 |
Target: 5'- -gGCCAgcGGA-----UGCCCGgGCGc -3' miRNA: 3'- ggCGGUaaCCUaaaaaACGGGCgCGC- -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 100813 | 0.67 | 0.979746 |
Target: 5'- uUGCCAUUGcGGccgaccucgGCCCGgGCGg -3' miRNA: 3'- gGCGGUAAC-CUaaaaaa---CGGGCgCGC- -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 56991 | 0.67 | 0.979053 |
Target: 5'- cUCGCCGggUGGGUaugagccgcagGCCgGCGCGc -3' miRNA: 3'- -GGCGGUa-ACCUAaaaaa------CGGgCGCGC- -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 78265 | 0.67 | 0.978818 |
Target: 5'- gUCGCCGgcGGGcccgUUGgCCGCGCc -3' miRNA: 3'- -GGCGGUaaCCUaaaaAACgGGCGCGc -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 77643 | 0.67 | 0.978818 |
Target: 5'- gCCGCCcgUGGAg-----GCCuuCGaCGCGg -3' miRNA: 3'- -GGCGGuaACCUaaaaaaCGG--GC-GCGC- -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 43381 | 0.67 | 0.978818 |
Target: 5'- gCCGCCGacGGAgc----GCCCGCGg- -3' miRNA: 3'- -GGCGGUaaCCUaaaaaaCGGGCGCgc -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 38209 | 0.67 | 0.978818 |
Target: 5'- gCCGCCcgcGGAggcccgGgCCGCGCGc -3' miRNA: 3'- -GGCGGuaaCCUaaaaaaCgGGCGCGC- -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 76419 | 0.67 | 0.978342 |
Target: 5'- gCCGCCGgaGGAgcccggggUGgCCGCGaCGg -3' miRNA: 3'- -GGCGGUaaCCUaaaaa---ACgGGCGC-GC- -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 935 | 0.67 | 0.978101 |
Target: 5'- aCCGCCGcccucg-----GCCCGCGCGc -3' miRNA: 3'- -GGCGGUaaccuaaaaaaCGGGCGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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