miRNA display CGI


Results 41 - 60 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6686 5' -50.9 NC_001847.1 + 29561 0.66 0.988367
Target:  5'- gCCGCCGgcGGGggc---GCCgGCGCc -3'
miRNA:   3'- -GGCGGUaaCCUaaaaaaCGGgCGCGc -5'
6686 5' -50.9 NC_001847.1 + 29902 0.68 0.966435
Target:  5'- gCCGCCcgaagUGcGcccgccugUGCCCGCGCGc -3'
miRNA:   3'- -GGCGGua---AC-Cuaaaaa--ACGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 30040 0.7 0.923602
Target:  5'- gCCGCgGccgUGGGcgacgUUGCCgGCGCGg -3'
miRNA:   3'- -GGCGgUa--ACCUaaaa-AACGGgCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 30081 0.69 0.941421
Target:  5'- gCCGCCcggGGAcuaccacacGCCCGCGCc -3'
miRNA:   3'- -GGCGGuaaCCUaaaaaa---CGGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 30644 0.66 0.987441
Target:  5'- aCGCCG-UGGAccccgagaacUGgCCGCGCGa -3'
miRNA:   3'- gGCGGUaACCUaaaaa-----ACgGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 30715 0.7 0.929152
Target:  5'- gCGCUccUGGAc-----GCCCGCGCGg -3'
miRNA:   3'- gGCGGuaACCUaaaaaaCGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 31367 0.67 0.981082
Target:  5'- cCCGCCGgcccGGG-----UGCCgGCGCa -3'
miRNA:   3'- -GGCGGUaa--CCUaaaaaACGGgCGCGc -5'
6686 5' -50.9 NC_001847.1 + 32016 0.66 0.992229
Target:  5'- gCGCCGgcGGcccgc--GCUCGCGCGg -3'
miRNA:   3'- gGCGGUaaCCuaaaaaaCGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 32029 0.66 0.993261
Target:  5'- uCCGgCGgggcgcGGGgacggcGCCCGCGCGg -3'
miRNA:   3'- -GGCgGUaa----CCUaaaaaaCGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 32129 0.72 0.849397
Target:  5'- gCCGCCGgcgcUGGGcgccgccgcGCCCGCGCa -3'
miRNA:   3'- -GGCGGUa---ACCUaaaaaa---CGGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 32309 0.66 0.988065
Target:  5'- aCCcCCccgGGGUcgcaggggGCCCGCGCGg -3'
miRNA:   3'- -GGcGGuaaCCUAaaaaa---CGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 33657 0.67 0.976359
Target:  5'- gCGCgCGcgUGGccgcg--GCCCGCGCGg -3'
miRNA:   3'- gGCG-GUa-ACCuaaaaaaCGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 34096 0.66 0.989792
Target:  5'- gCCGCCGUg---------GCUCGCGCGg -3'
miRNA:   3'- -GGCGGUAaccuaaaaaaCGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 36606 0.66 0.986793
Target:  5'- uCUGCUAccGGGUg---UGCuaCCGCGCGg -3'
miRNA:   3'- -GGCGGUaaCCUAaaaaACG--GGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 36979 0.66 0.991076
Target:  5'- gCGCCGgc-GAgcgg--GCCCGCGCc -3'
miRNA:   3'- gGCGGUaacCUaaaaaaCGGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 37600 0.67 0.98316
Target:  5'- gCgGCCGggGGccg----GCCCGCGCu -3'
miRNA:   3'- -GgCGGUaaCCuaaaaaaCGGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 38209 0.67 0.978818
Target:  5'- gCCGCCcgcGGAggcccgGgCCGCGCGc -3'
miRNA:   3'- -GGCGGuaaCCUaaaaaaCgGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 38624 0.67 0.981724
Target:  5'- gCGCCGUacUGGAccacggaaguccaUGCCCGcCGCGu -3'
miRNA:   3'- gGCGGUA--ACCUaaaaa--------ACGGGC-GCGC- -5'
6686 5' -50.9 NC_001847.1 + 39056 0.68 0.96087
Target:  5'- cCCGCUcgUGGG------GCUCGCGCa -3'
miRNA:   3'- -GGCGGuaACCUaaaaaaCGGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 39295 0.69 0.953057
Target:  5'- aCCGCCuagcUUGGA------GCCCGUGCc -3'
miRNA:   3'- -GGCGGu---AACCUaaaaaaCGGGCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.