miRNA display CGI


Results 61 - 80 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6686 5' -50.9 NC_001847.1 + 39479 0.67 0.981082
Target:  5'- gUGCCA-UGGAgacca-GCCCGcCGCGc -3'
miRNA:   3'- gGCGGUaACCUaaaaaaCGGGC-GCGC- -5'
6686 5' -50.9 NC_001847.1 + 40259 0.73 0.811192
Target:  5'- gCGCCGaagcgcGGAUUUgcgagcUGCCCGCGCc -3'
miRNA:   3'- gGCGGUaa----CCUAAAaa----ACGGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 40956 0.66 0.991076
Target:  5'- gCGCCuc--GAac---UGCCCGCGCGa -3'
miRNA:   3'- gGCGGuaacCUaaaaaACGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 41260 0.7 0.934444
Target:  5'- gCUGCCAU-----UUUUUGCCgGCGCGc -3'
miRNA:   3'- -GGCGGUAaccuaAAAAACGGgCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 41867 0.69 0.944721
Target:  5'- gCCGCCGacaucgcGGcgcgauacgGCCCGCGCGg -3'
miRNA:   3'- -GGCGGUaa-----CCuaaaaaa--CGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 43203 0.69 0.953882
Target:  5'- gCGCCucgUGGAUUgcucggcgccgUUGCCCgguggcggugggggcGCGCGg -3'
miRNA:   3'- gGCGGua-ACCUAAaa---------AACGGG---------------CGCGC- -5'
6686 5' -50.9 NC_001847.1 + 43381 0.67 0.978818
Target:  5'- gCCGCCGacGGAgc----GCCCGCGg- -3'
miRNA:   3'- -GGCGGUaaCCUaaaaaaCGGGCGCgc -5'
6686 5' -50.9 NC_001847.1 + 43501 0.67 0.981082
Target:  5'- gCCGCCGUcgaucgcuacUGGGcg----GCgCGCGCGg -3'
miRNA:   3'- -GGCGGUA----------ACCUaaaaaaCGgGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 46765 0.69 0.938987
Target:  5'- cCCGCCGcgcGGGgccgguccgccgcGCCCGCGCGc -3'
miRNA:   3'- -GGCGGUaa-CCUaaaaaa-------CGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 47712 0.68 0.97342
Target:  5'- gCCGCCg--GGAacgccagcccgucGCCCGCGCa -3'
miRNA:   3'- -GGCGGuaaCCUaaaaaa-------CGGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 48812 0.7 0.934444
Target:  5'- gCGCCAUcggGGAUguccggGCcuugCCGCGCGg -3'
miRNA:   3'- gGCGGUAa--CCUAaaaaa-CG----GGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 49531 0.68 0.967734
Target:  5'- gCGCCGgcgcuUUGGcUUUagcgccUUUGCCgGCGCGc -3'
miRNA:   3'- gGCGGU-----AACCuAAA------AAACGGgCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 49992 0.68 0.964418
Target:  5'- uCCGCgAgaGGA------GCCCGCGCGc -3'
miRNA:   3'- -GGCGgUaaCCUaaaaaaCGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 52260 0.69 0.938492
Target:  5'- gCCGCUucgUGcucgcg-UGCCCGCGCGc -3'
miRNA:   3'- -GGCGGua-ACcuaaaaaACGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 52407 0.7 0.916601
Target:  5'- gCGCCGUgcuccaGGcgcugg-GCCCGCGCGu -3'
miRNA:   3'- gGCGGUAa-----CCuaaaaaaCGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 53680 0.68 0.964418
Target:  5'- gCCGCCAgccgcaaGAUg---UGCgCGCGCGa -3'
miRNA:   3'- -GGCGGUaac----CUAaaaaACGgGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 54304 0.66 0.992964
Target:  5'- gCCGCCGcccGGAUc---UGCCCccccaagucgcggcGCGCGg -3'
miRNA:   3'- -GGCGGUaa-CCUAaaaaACGGG--------------CGCGC- -5'
6686 5' -50.9 NC_001847.1 + 54417 0.7 0.9313
Target:  5'- gCCGCgGUUGGccucggcgGCCCGgGCa -3'
miRNA:   3'- -GGCGgUAACCuaaaaaa-CGGGCgCGc -5'
6686 5' -50.9 NC_001847.1 + 55736 0.73 0.799221
Target:  5'- gCGCCAcggUGGuccggcucgcGCCCGCGCGg -3'
miRNA:   3'- gGCGGUa--ACCuaaaaaa---CGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 56991 0.67 0.979053
Target:  5'- cUCGCCGggUGGGUaugagccgcagGCCgGCGCGc -3'
miRNA:   3'- -GGCGGUa-ACCUAaaaaa------CGGgCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.