miRNA display CGI


Results 81 - 100 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6686 5' -50.9 NC_001847.1 + 57563 0.77 0.57577
Target:  5'- gCCGCCGUgcGAgcucg-GCCCGCGCGg -3'
miRNA:   3'- -GGCGGUAacCUaaaaaaCGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 57874 0.72 0.864662
Target:  5'- gCCGCCGUcgcacgaGGGUgucgcccgccagcGCCCGCGCGa -3'
miRNA:   3'- -GGCGGUAa------CCUAaaaaa--------CGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 58064 0.66 0.991076
Target:  5'- gCCGCCgAUUGGcgc----GCgCGCGCGc -3'
miRNA:   3'- -GGCGG-UAACCuaaaaaaCGgGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 58730 0.68 0.964418
Target:  5'- cCCGCCGcgGGGUgcc---CCCGcCGCGg -3'
miRNA:   3'- -GGCGGUaaCCUAaaaaacGGGC-GCGC- -5'
6686 5' -50.9 NC_001847.1 + 59564 0.68 0.973697
Target:  5'- -gGCC--UGGAgcacuuUUUUUUGCCgGCGCu -3'
miRNA:   3'- ggCGGuaACCU------AAAAAACGGgCGCGc -5'
6686 5' -50.9 NC_001847.1 + 60476 0.67 0.976102
Target:  5'- uCCGCCA-UGGcgccgccgcuuugUGCgCGCGCGg -3'
miRNA:   3'- -GGCGGUaACCuaaaaa-------ACGgGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 60714 0.66 0.989656
Target:  5'- gCGcCCGUUGuGGUacauuacgucggcgGCCCGCGCGc -3'
miRNA:   3'- gGC-GGUAAC-CUAaaaaa---------CGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 61122 0.66 0.993261
Target:  5'- uCCGCCAgcGGcacgc--GCCgGCGCa -3'
miRNA:   3'- -GGCGGUaaCCuaaaaaaCGGgCGCGc -5'
6686 5' -50.9 NC_001847.1 + 61393 0.68 0.973697
Target:  5'- gCCGCCGcccggcgcUUGGAac---UGCCCuCGCGg -3'
miRNA:   3'- -GGCGGU--------AACCUaaaaaACGGGcGCGC- -5'
6686 5' -50.9 NC_001847.1 + 61939 0.71 0.902809
Target:  5'- gCGUCAgcGGcggcgcgGCCCGCGCGg -3'
miRNA:   3'- gGCGGUaaCCuaaaaaaCGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 62411 0.71 0.880584
Target:  5'- cCCGCCGgcgcug---UUGCCCGCGUGc -3'
miRNA:   3'- -GGCGGUaaccuaaaaAACGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 63192 0.71 0.898835
Target:  5'- gCGCCA-UGGccga---GCCCGCGCGc -3'
miRNA:   3'- gGCGGUaACCuaaaaaaCGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 64138 0.7 0.911729
Target:  5'- gCCGCCGUacUGGAcaugcgGCCCGCcauGCa -3'
miRNA:   3'- -GGCGGUA--ACCUaaaaaaCGGGCG---CGc -5'
6686 5' -50.9 NC_001847.1 + 64672 0.69 0.957085
Target:  5'- aCGCCAUccaccGGGc-----GCCCGCGCGu -3'
miRNA:   3'- gGCGGUAa----CCUaaaaaaCGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 65453 0.66 0.992656
Target:  5'- cCCGCCcgUGuaggcgg-GCgCGCGCGg -3'
miRNA:   3'- -GGCGGuaACcuaaaaaaCGgGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 65814 0.69 0.957085
Target:  5'- gCCGCCAgcagcgcccgagGCCCGCGCc -3'
miRNA:   3'- -GGCGGUaaccuaaaaaa-CGGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 66150 0.7 0.928062
Target:  5'- gCGCaCGUgcUGGAcgUgcucucggccgUGCCCGCGCGg -3'
miRNA:   3'- gGCG-GUA--ACCUaaAaa---------ACGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 66659 0.68 0.96087
Target:  5'- aCUGCC--UGGcgcgcUUgcGCCCGCGCGg -3'
miRNA:   3'- -GGCGGuaACCuaa--AAaaCGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 67591 0.69 0.957085
Target:  5'- gCGCCGaucugGGAgaacc-GCCCGCGCc -3'
miRNA:   3'- gGCGGUaa---CCUaaaaaaCGGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 67834 0.67 0.98316
Target:  5'- aCGCCGgcGGGgc---UGCCgGCGCu -3'
miRNA:   3'- gGCGGUaaCCUaaaaaACGGgCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.