miRNA display CGI


Results 61 - 80 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6686 5' -50.9 NC_001847.1 + 91610 0.71 0.889916
Target:  5'- gCGCCGUguUGGccgcgaggaaGCCCGCGCGc -3'
miRNA:   3'- gGCGGUA--ACCuaaaaaa---CGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 91562 0.66 0.991552
Target:  5'- gCGCCAcgcUGGGgcgcgcgucGCCCGCgGCGa -3'
miRNA:   3'- gGCGGUa--ACCUaaaaaa---CGGGCG-CGC- -5'
6686 5' -50.9 NC_001847.1 + 91018 0.66 0.992229
Target:  5'- aCGCCGUgccggcGGAgcagcUGCCCG-GCGu -3'
miRNA:   3'- gGCGGUAa-----CCUaaaaaACGGGCgCGC- -5'
6686 5' -50.9 NC_001847.1 + 89820 0.72 0.835945
Target:  5'- aCCGCCG-UGGAgcgcgcgGCCaaCGCGCGa -3'
miRNA:   3'- -GGCGGUaACCUaaaaaa-CGG--GCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 89122 0.66 0.993261
Target:  5'- gCCGCCccggUGGucg---UGCgCGCGCu -3'
miRNA:   3'- -GGCGGua--ACCuaaaaaACGgGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 88900 0.7 0.933406
Target:  5'- cCCGCCGggGGcggcucccUUGCgCGCGCGc -3'
miRNA:   3'- -GGCGGUaaCCuaaaa---AACGgGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 88558 0.69 0.948783
Target:  5'- gCGCCGgcGGGgcugacGCCCGgCGCGg -3'
miRNA:   3'- gGCGGUaaCCUaaaaaaCGGGC-GCGC- -5'
6686 5' -50.9 NC_001847.1 + 88227 0.67 0.985061
Target:  5'- gCGCCucgccGGAgccgagGCCgGCGCGg -3'
miRNA:   3'- gGCGGuaa--CCUaaaaaaCGGgCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 87842 0.7 0.929152
Target:  5'- aCGCCGgcgGGcgUgaugGCCCGCGgGc -3'
miRNA:   3'- gGCGGUaa-CCuaAaaaaCGGGCGCgC- -5'
6686 5' -50.9 NC_001847.1 + 87562 0.68 0.967734
Target:  5'- aCCGCCAcuacgccucGGGcgaggUGCCCGUGCu -3'
miRNA:   3'- -GGCGGUaa-------CCUaaaaaACGGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 87250 0.68 0.974787
Target:  5'- aCCGCCGcgGGAUUc--UGCCgcuuucucgcggacgUGCGCGc -3'
miRNA:   3'- -GGCGGUaaCCUAAaaaACGG---------------GCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 86417 0.7 0.934444
Target:  5'- -aGCUcgUGGAUUUguuggcgGCgCUGCGCGg -3'
miRNA:   3'- ggCGGuaACCUAAAaaa----CG-GGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 86270 0.69 0.947003
Target:  5'- cCCGCgCGcUGGGUUUUUcaacccguaccucGCgCCGCGCGg -3'
miRNA:   3'- -GGCG-GUaACCUAAAAAa------------CG-GGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 85850 0.69 0.944257
Target:  5'- aCCGCCAgcaGcGAgucgcgGCuCCGCGCGg -3'
miRNA:   3'- -GGCGGUaa-C-CUaaaaaaCG-GGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 83304 0.66 0.986793
Target:  5'- gCGCCAgcucGGccacgUUGCCCgGCGUGa -3'
miRNA:   3'- gGCGGUaa--CCuaaaaAACGGG-CGCGC- -5'
6686 5' -50.9 NC_001847.1 + 82970 0.75 0.706859
Target:  5'- cCCGCC--UGGAagacgcgauugUUGCCCGCGCu -3'
miRNA:   3'- -GGCGGuaACCUaaaa-------AACGGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 82143 0.68 0.963027
Target:  5'- gCCGCUGUcGGcuccgccaUGCCUGCGCGu -3'
miRNA:   3'- -GGCGGUAaCCuaaaaa--ACGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 81444 0.67 0.981082
Target:  5'- gCCGCCGgcGGcgc----GCUCGCGCGc -3'
miRNA:   3'- -GGCGGUaaCCuaaaaaaCGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 80318 0.67 0.982555
Target:  5'- gCGCgGUUGuccaccaccgUGCCCGCGCu -3'
miRNA:   3'- gGCGgUAACcuaaaaa---ACGGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 79131 0.74 0.773501
Target:  5'- gCCGCCA--GGAcg---UGCCCGuCGCGg -3'
miRNA:   3'- -GGCGGUaaCCUaaaaaACGGGC-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.