miRNA display CGI


Results 81 - 100 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6686 5' -50.9 NC_001847.1 + 27410 0.69 0.954698
Target:  5'- cCCGCCGgcccaaGGGUUguagccccggggUGCCCGCccGCGa -3'
miRNA:   3'- -GGCGGUaa----CCUAAaaa---------ACGGGCG--CGC- -5'
6686 5' -50.9 NC_001847.1 + 92391 0.69 0.958245
Target:  5'- -gGCCGUccUGGAUcUgcuguccgccccgccGCCCGCGCGg -3'
miRNA:   3'- ggCGGUA--ACCUAaAaaa------------CGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 96878 0.68 0.965771
Target:  5'- uCCGCgCuggGGAgggaccgccgUGCUCGCGCGg -3'
miRNA:   3'- -GGCG-GuaaCCUaaaaa-----ACGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 29902 0.68 0.966435
Target:  5'- gCCGCCcgaagUGcGcccgccugUGCCCGCGCGc -3'
miRNA:   3'- -GGCGGua---AC-Cuaaaaa--ACGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 87562 0.68 0.967734
Target:  5'- aCCGCCAcuacgccucGGGcgaggUGCCCGUGCu -3'
miRNA:   3'- -GGCGGUaa-------CCUaaaaaACGGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 131666 0.68 0.967734
Target:  5'- gCCGCCGgucggGGAcgccaUGgCCGCGCa -3'
miRNA:   3'- -GGCGGUaa---CCUaaaaaACgGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 49531 0.68 0.967734
Target:  5'- gCGCCGgcgcuUUGGcUUUagcgccUUUGCCgGCGCGc -3'
miRNA:   3'- gGCGGU-----AACCuAAA------AAACGGgCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 108533 0.69 0.951377
Target:  5'- gCGCCug-GGAgggcuuaccUGCCCGCGgGg -3'
miRNA:   3'- gGCGGuaaCCUaaaaa----ACGGGCGCgC- -5'
6686 5' -50.9 NC_001847.1 + 93823 0.69 0.944257
Target:  5'- cCCGC---UGGAc--UUUGCgCCGCGCGa -3'
miRNA:   3'- -GGCGguaACCUaaaAAACG-GGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 17689 0.69 0.944257
Target:  5'- aCCGCCAgUGGcgUUgucgGCCaCGcCGCa -3'
miRNA:   3'- -GGCGGUaACCuaAAaaa-CGG-GC-GCGc -5'
6686 5' -50.9 NC_001847.1 + 88900 0.7 0.933406
Target:  5'- cCCGCCGggGGcggcucccUUGCgCGCGCGc -3'
miRNA:   3'- -GGCGGUaaCCuaaaa---AACGgGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 41260 0.7 0.934444
Target:  5'- gCUGCCAU-----UUUUUGCCgGCGCGc -3'
miRNA:   3'- -GGCGGUAaccuaAAAAACGGgCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 48812 0.7 0.934444
Target:  5'- gCGCCAUcggGGAUguccggGCcuugCCGCGCGg -3'
miRNA:   3'- gGCGGUAa--CCUAaaaaa-CG----GGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 86417 0.7 0.934444
Target:  5'- -aGCUcgUGGAUUUguuggcgGCgCUGCGCGg -3'
miRNA:   3'- ggCGGuaACCUAAAaaa----CG-GGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 117277 0.7 0.934444
Target:  5'- gCCGCCGUuuUGGGgcgc---CCCGCGCc -3'
miRNA:   3'- -GGCGGUA--ACCUaaaaaacGGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 52260 0.69 0.938492
Target:  5'- gCCGCUucgUGcucgcg-UGCCCGCGCGc -3'
miRNA:   3'- -GGCGGua-ACcuaaaaaACGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 46765 0.69 0.938987
Target:  5'- cCCGCCGcgcGGGgccgguccgccgcGCCCGCGCGc -3'
miRNA:   3'- -GGCGGUaa-CCUaaaaaa-------CGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 101378 0.69 0.939479
Target:  5'- gCGCCGcgGGGgc---UGCCCGCgGCGc -3'
miRNA:   3'- gGCGGUaaCCUaaaaaACGGGCG-CGC- -5'
6686 5' -50.9 NC_001847.1 + 132894 0.69 0.941421
Target:  5'- gCCGCCcggGGAcuaccacacGCCCGCGCc -3'
miRNA:   3'- -GGCGGuaaCCUaaaaaa---CGGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 69528 0.68 0.967734
Target:  5'- aCGUCAUcGGGUUUUUcgcGCCCcggGCGUGg -3'
miRNA:   3'- gGCGGUAaCCUAAAAAa--CGGG---CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.