Results 41 - 60 of 196 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6686 | 5' | -50.9 | NC_001847.1 | + | 121669 | 0.67 | 0.98316 |
Target: 5'- gCCGCCGcugUGGGgugcg-GCCCGaGCa -3' miRNA: 3'- -GGCGGUa--ACCUaaaaaaCGGGCgCGc -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 58064 | 0.66 | 0.991076 |
Target: 5'- gCCGCCgAUUGGcgc----GCgCGCGCGc -3' miRNA: 3'- -GGCGG-UAACCuaaaaaaCGgGCGCGC- -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 32029 | 0.66 | 0.993261 |
Target: 5'- uCCGgCGgggcgcGGGgacggcGCCCGCGCGg -3' miRNA: 3'- -GGCgGUaa----CCUaaaaaaCGGGCGCGC- -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 67834 | 0.67 | 0.98316 |
Target: 5'- aCGCCGgcGGGgc---UGCCgGCGCu -3' miRNA: 3'- gGCGGUaaCCUaaaaaACGGgCGCGc -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 61122 | 0.66 | 0.993261 |
Target: 5'- uCCGCCAgcGGcacgc--GCCgGCGCa -3' miRNA: 3'- -GGCGGUaaCCuaaaaaaCGGgCGCGc -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 69142 | 0.68 | 0.964418 |
Target: 5'- gCCGCCG-UGGcg----UGCCCG-GCGg -3' miRNA: 3'- -GGCGGUaACCuaaaaaACGGGCgCGC- -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 119826 | 0.66 | 0.993261 |
Target: 5'- gCCGCgauCAUguacGGGUcgcgcacGCCCGCGCGc -3' miRNA: 3'- -GGCG---GUAa---CCUAaaaaa--CGGGCGCGC- -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 28853 | 0.68 | 0.967734 |
Target: 5'- gCCGCCGgucggGGAcgccaUGgCCGCGCa -3' miRNA: 3'- -GGCGGUaa---CCUaaaaaACgGGCGCGc -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 96864 | 0.68 | 0.972288 |
Target: 5'- gCCGCCAccugccgcc--GCCCGCGCGu -3' miRNA: 3'- -GGCGGUaaccuaaaaaaCGGGCGCGC- -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 275 | 0.67 | 0.975319 |
Target: 5'- -aGCCcg-GGGgccgccgaGCCCGCGCGg -3' miRNA: 3'- ggCGGuaaCCUaaaaaa--CGGGCGCGC- -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 29013 | 0.67 | 0.977858 |
Target: 5'- gCGCCGgcGGcagcggcGCCCGCGCc -3' miRNA: 3'- gGCGGUaaCCuaaaaaaCGGGCGCGc -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 56991 | 0.67 | 0.979053 |
Target: 5'- cUCGCCGggUGGGUaugagccgcagGCCgGCGCGc -3' miRNA: 3'- -GGCGGUa-ACCUAaaaaa------CGGgCGCGC- -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 80318 | 0.67 | 0.982555 |
Target: 5'- gCGCgGUUGuccaccaccgUGCCCGCGCu -3' miRNA: 3'- gGCGgUAACcuaaaaa---ACGGGCGCGc -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 83304 | 0.66 | 0.986793 |
Target: 5'- gCGCCAgcucGGccacgUUGCCCgGCGUGa -3' miRNA: 3'- gGCGGUaa--CCuaaaaAACGGG-CGCGC- -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 32309 | 0.66 | 0.988065 |
Target: 5'- aCCcCCccgGGGUcgcaggggGCCCGCGCGg -3' miRNA: 3'- -GGcGGuaaCCUAaaaaa---CGGGCGCGC- -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 6990 | 0.66 | 0.989792 |
Target: 5'- uUGCCGgcgUGGGUagUUUGuauaugcacaCCCGCGCc -3' miRNA: 3'- gGCGGUa--ACCUAaaAAAC----------GGGCGCGc -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 132130 | 0.66 | 0.989792 |
Target: 5'- aCCGCCccuAUUGGGcggcgcUGCugCCGCGCa -3' miRNA: 3'- -GGCGG---UAACCUaaaaa-ACG--GGCGCGc -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 91562 | 0.66 | 0.991552 |
Target: 5'- gCGCCAcgcUGGGgcgcgcgucGCCCGCgGCGa -3' miRNA: 3'- gGCGGUa--ACCUaaaaaa---CGGGCG-CGC- -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 10728 | 0.66 | 0.992229 |
Target: 5'- gCCGCCAgcgaguuuagGGGggcgggGCCC-CGCGg -3' miRNA: 3'- -GGCGGUaa--------CCUaaaaaaCGGGcGCGC- -5' |
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6686 | 5' | -50.9 | NC_001847.1 | + | 54304 | 0.66 | 0.992964 |
Target: 5'- gCCGCCGcccGGAUc---UGCCCccccaagucgcggcGCGCGg -3' miRNA: 3'- -GGCGGUaa-CCUAaaaaACGGG--------------CGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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