miRNA display CGI


Results 61 - 80 of 196 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6686 5' -50.9 NC_001847.1 + 80318 0.67 0.982555
Target:  5'- gCGCgGUUGuccaccaccgUGCCCGCGCu -3'
miRNA:   3'- gGCGgUAACcuaaaaa---ACGGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 78265 0.67 0.978818
Target:  5'- gUCGCCGgcGGGcccgUUGgCCGCGCc -3'
miRNA:   3'- -GGCGGUaaCCUaaaaAACgGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 104828 0.66 0.993261
Target:  5'- gCCGCCGggGGGgcgggcGUCCGCaGCu -3'
miRNA:   3'- -GGCGGUaaCCUaaaaaaCGGGCG-CGc -5'
6686 5' -50.9 NC_001847.1 + 65453 0.66 0.992656
Target:  5'- cCCGCCcgUGuaggcgg-GCgCGCGCGg -3'
miRNA:   3'- -GGCGGuaACcuaaaaaaCGgGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 133199 0.66 0.992229
Target:  5'- cUCGCUGgaGGAgcuc-UGCgCCGCGCGc -3'
miRNA:   3'- -GGCGGUaaCCUaaaaaACG-GGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 40956 0.66 0.991076
Target:  5'- gCGCCuc--GAac---UGCCCGCGCGa -3'
miRNA:   3'- gGCGGuaacCUaaaaaACGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 115899 0.66 0.989792
Target:  5'- gCGCCGcUUGGccg----GCUCGCGCa -3'
miRNA:   3'- gGCGGU-AACCuaaaaaaCGGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 60714 0.66 0.989656
Target:  5'- gCGcCCGUUGuGGUacauuacgucggcgGCCCGCGCGc -3'
miRNA:   3'- gGC-GGUAAC-CUAaaaaa---------CGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 30644 0.66 0.987441
Target:  5'- aCGCCG-UGGAccccgagaacUGgCCGCGCGa -3'
miRNA:   3'- gGCGGUaACCUaaaaa-----ACgGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 20750 0.66 0.98612
Target:  5'- aCGCCGacgUGGAUccgcaaucccUGCCCGUGgGa -3'
miRNA:   3'- gGCGGUa--ACCUAaaaa------ACGGGCGCgC- -5'
6686 5' -50.9 NC_001847.1 + 123438 0.69 0.938492
Target:  5'- gCCGCCGaaUGGGUUUgccgggcuugGCCCG-GCGa -3'
miRNA:   3'- -GGCGGUa-ACCUAAAaaa-------CGGGCgCGC- -5'
6686 5' -50.9 NC_001847.1 + 41867 0.69 0.944721
Target:  5'- gCCGCCGacaucgcGGcgcgauacgGCCCGCGCGg -3'
miRNA:   3'- -GGCGGUaa-----CCuaaaaaa--CGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 92846 0.67 0.975843
Target:  5'- gCCGCCGUagaaauuUGGuucgaggacgugGCgCCGCGCGa -3'
miRNA:   3'- -GGCGGUA-------ACCuaaaaaa-----CG-GGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 103961 0.68 0.973697
Target:  5'- aCCGUCGaUGGcgUcggcGCCCaGCGCGg -3'
miRNA:   3'- -GGCGGUaACCuaAaaaaCGGG-CGCGC- -5'
6686 5' -50.9 NC_001847.1 + 28853 0.68 0.967734
Target:  5'- gCCGCCGgucggGGAcgccaUGgCCGCGCa -3'
miRNA:   3'- -GGCGGUaa---CCUaaaaaACgGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 69142 0.68 0.964418
Target:  5'- gCCGCCG-UGGcg----UGCCCG-GCGg -3'
miRNA:   3'- -GGCGGUaACCuaaaaaACGGGCgCGC- -5'
6686 5' -50.9 NC_001847.1 + 82143 0.68 0.963027
Target:  5'- gCCGCUGUcGGcuccgccaUGCCUGCGCGu -3'
miRNA:   3'- -GGCGGUAaCCuaaaaa--ACGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 39056 0.68 0.96087
Target:  5'- cCCGCUcgUGGG------GCUCGCGCa -3'
miRNA:   3'- -GGCGGuaACCUaaaaaaCGGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 129778 0.69 0.956299
Target:  5'- aCCGCCGgagccUGGGcccggccGCgCCGCGCGa -3'
miRNA:   3'- -GGCGGUa----ACCUaaaaaa-CG-GGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 96599 0.69 0.948783
Target:  5'- gCUGCCAguaacgcGGGUUUUccUUGCgCGUGCGc -3'
miRNA:   3'- -GGCGGUaa-----CCUAAAA--AACGgGCGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.