miRNA display CGI


Results 81 - 100 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6686 5' -50.9 NC_001847.1 + 19654 0.68 0.971709
Target:  5'- gCGCCcuuccaGGGgcaagcccagacgUGCCCGCGCGg -3'
miRNA:   3'- gGCGGuaa---CCUaaaaa--------ACGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 116902 0.68 0.967734
Target:  5'- gCgGCCAUcuUGGAUcca---CCCGCGCGc -3'
miRNA:   3'- -GgCGGUA--ACCUAaaaaacGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 53680 0.68 0.964418
Target:  5'- gCCGCCAgccgcaaGAUg---UGCgCGCGCGa -3'
miRNA:   3'- -GGCGGUaac----CUAaaaaACGgGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 13822 0.68 0.96087
Target:  5'- aCGCgAgcGaGAUcgUUUGCCgCGCGCGg -3'
miRNA:   3'- gGCGgUaaC-CUAaaAAACGG-GCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 129778 0.69 0.956299
Target:  5'- aCCGCCGgagccUGGGcccggccGCgCCGCGCGa -3'
miRNA:   3'- -GGCGGUa----ACCUaaaaaa-CG-GGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 40956 0.66 0.991076
Target:  5'- gCGCCuc--GAac---UGCCCGCGCGa -3'
miRNA:   3'- gGCGGuaacCUaaaaaACGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 65453 0.66 0.992656
Target:  5'- cCCGCCcgUGuaggcgg-GCgCGCGCGg -3'
miRNA:   3'- -GGCGGuaACcuaaaaaaCGgGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 115899 0.66 0.989792
Target:  5'- gCGCCGcUUGGccg----GCUCGCGCa -3'
miRNA:   3'- gGCGGU-AACCuaaaaaaCGGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 60714 0.66 0.989656
Target:  5'- gCGcCCGUUGuGGUacauuacgucggcgGCCCGCGCGc -3'
miRNA:   3'- gGC-GGUAAC-CUAaaaaa---------CGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 104828 0.66 0.993261
Target:  5'- gCCGCCGggGGGgcgggcGUCCGCaGCu -3'
miRNA:   3'- -GGCGGUaaCCUaaaaaaCGGGCG-CGc -5'
6686 5' -50.9 NC_001847.1 + 30644 0.66 0.987441
Target:  5'- aCGCCG-UGGAccccgagaacUGgCCGCGCGa -3'
miRNA:   3'- gGCGGUaACCUaaaaa-----ACgGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 29509 0.79 0.513711
Target:  5'- cCCGCCGgcGGAgg---UGCCgGCGCGg -3'
miRNA:   3'- -GGCGGUaaCCUaaaaaACGGgCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 133199 0.66 0.992229
Target:  5'- cUCGCUGgaGGAgcuc-UGCgCCGCGCGc -3'
miRNA:   3'- -GGCGGUaaCCUaaaaaACG-GGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 86417 0.7 0.934444
Target:  5'- -aGCUcgUGGAUUUguuggcgGCgCUGCGCGg -3'
miRNA:   3'- ggCGGuaACCUAAAaaa----CG-GGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 48812 0.7 0.934444
Target:  5'- gCGCCAUcggGGAUguccggGCcuugCCGCGCGg -3'
miRNA:   3'- gGCGGUAa--CCUAaaaaa-CG----GGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 33657 0.67 0.976359
Target:  5'- gCGCgCGcgUGGccgcg--GCCCGCGCGg -3'
miRNA:   3'- gGCG-GUa-ACCuaaaaaaCGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 60476 0.67 0.976102
Target:  5'- uCCGCCA-UGGcgccgccgcuuugUGCgCGCGCGg -3'
miRNA:   3'- -GGCGGUaACCuaaaaa-------ACGgGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 26957 0.67 0.976359
Target:  5'- gUCGCCggaGUUGGAaaugaggUGCgCGCGCa -3'
miRNA:   3'- -GGCGG---UAACCUaaaaa--ACGgGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 15400 0.67 0.976359
Target:  5'- uCCGCCAgcUGGGcg----GCCCuggaGCGCGg -3'
miRNA:   3'- -GGCGGUa-ACCUaaaaaaCGGG----CGCGC- -5'
6686 5' -50.9 NC_001847.1 + 63192 0.71 0.898835
Target:  5'- gCGCCA-UGGccga---GCCCGCGCGc -3'
miRNA:   3'- gGCGGUaACCuaaaaaaCGGGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.