miRNA display CGI


Results 101 - 120 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6686 5' -50.9 NC_001847.1 + 99445 0.66 0.993261
Target:  5'- gCGCCAgcgUGGGag--UUGCgCaGCGCGc -3'
miRNA:   3'- gGCGGUa--ACCUaaaaAACGgG-CGCGC- -5'
6686 5' -50.9 NC_001847.1 + 60476 0.67 0.976102
Target:  5'- uCCGCCA-UGGcgccgccgcuuugUGCgCGCGCGg -3'
miRNA:   3'- -GGCGGUaACCuaaaaa-------ACGgGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 103088 0.67 0.975319
Target:  5'- -aGCCcg-GGGgccgccgaGCCCGCGCGg -3'
miRNA:   3'- ggCGGuaaCCUaaaaaa--CGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 124535 0.67 0.975054
Target:  5'- gCGCCAgcagGGcgcgggccggcgccgGCCCGCGCGc -3'
miRNA:   3'- gGCGGUaa--CCuaaaaaa--------CGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 87250 0.68 0.974787
Target:  5'- aCCGCCGcgGGAUUc--UGCCgcuuucucgcggacgUGCGCGc -3'
miRNA:   3'- -GGCGGUaaCCUAAaaaACGG---------------GCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 62411 0.71 0.880584
Target:  5'- cCCGCCGgcgcug---UUGCCCGCGUGc -3'
miRNA:   3'- -GGCGGUaaccuaaaaAACGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 63192 0.71 0.898835
Target:  5'- gCGCCA-UGGccga---GCCCGCGCGc -3'
miRNA:   3'- gGCGGUaACCuaaaaaaCGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 133728 0.68 0.970825
Target:  5'- cCCGCCAccGcGGUgcccgUGCcgCCGCGCGa -3'
miRNA:   3'- -GGCGGUaaC-CUAaaaa-ACG--GGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 88900 0.7 0.933406
Target:  5'- cCCGCCGggGGcggcucccUUGCgCGCGCGc -3'
miRNA:   3'- -GGCGGUaaCCuaaaa---AACGgGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 54417 0.7 0.9313
Target:  5'- gCCGCgGUUGGccucggcgGCCCGgGCa -3'
miRNA:   3'- -GGCGgUAACCuaaaaaa-CGGGCgCGc -5'
6686 5' -50.9 NC_001847.1 + 87842 0.7 0.929152
Target:  5'- aCGCCGgcgGGcgUgaugGCCCGCGgGc -3'
miRNA:   3'- gGCGGUaa-CCuaAaaaaCGGGCGCgC- -5'
6686 5' -50.9 NC_001847.1 + 86417 0.7 0.934444
Target:  5'- -aGCUcgUGGAUUUguuggcgGCgCUGCGCGg -3'
miRNA:   3'- ggCGGuaACCUAAAaaa----CG-GGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 130521 0.68 0.973697
Target:  5'- gCGCCGgcGGGcc----GCCCGCGCc -3'
miRNA:   3'- gGCGGUaaCCUaaaaaaCGGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 48812 0.7 0.934444
Target:  5'- gCGCCAUcggGGAUguccggGCcuugCCGCGCGg -3'
miRNA:   3'- gGCGGUAa--CCUAaaaaa-CG----GGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 15400 0.67 0.976359
Target:  5'- uCCGCCAgcUGGGcg----GCCCuggaGCGCGg -3'
miRNA:   3'- -GGCGGUa-ACCUaaaaaaCGGG----CGCGC- -5'
6686 5' -50.9 NC_001847.1 + 89122 0.66 0.993261
Target:  5'- gCCGCCccggUGGucg---UGCgCGCGCu -3'
miRNA:   3'- -GGCGGua--ACCuaaaaaACGgGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 131976 0.66 0.993261
Target:  5'- gCCGCgAggcgcUGGAggcg--GCCCGcCGCGc -3'
miRNA:   3'- -GGCGgUa----ACCUaaaaaaCGGGC-GCGC- -5'
6686 5' -50.9 NC_001847.1 + 134842 0.66 0.993261
Target:  5'- uCCGgCGgggcgcGGGgacggcGCCCGCGCGg -3'
miRNA:   3'- -GGCgGUaa----CCUaaaaaaCGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 69528 0.68 0.967734
Target:  5'- aCGUCAUcGGGUUUUUcgcGCCCcggGCGUGg -3'
miRNA:   3'- gGCGGUAaCCUAAAAAa--CGGG---CGCGC- -5'
6686 5' -50.9 NC_001847.1 + 77089 0.68 0.970825
Target:  5'- gCGCCAaucGGcg-----GCCCGCGCGc -3'
miRNA:   3'- gGCGGUaa-CCuaaaaaaCGGGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.