miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6686 5' -50.9 NC_001847.1 + 100 0.67 0.976359
Target:  5'- uCCGCCccUGGGUccggcGCCCcGCGCc -3'
miRNA:   3'- -GGCGGuaACCUAaaaaaCGGG-CGCGc -5'
6686 5' -50.9 NC_001847.1 + 275 0.67 0.975319
Target:  5'- -aGCCcg-GGGgccgccgaGCCCGCGCGg -3'
miRNA:   3'- ggCGGuaaCCUaaaaaa--CGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 478 0.75 0.7234
Target:  5'- gCGCCGUcaUGGG-----UGCCCGCGCc -3'
miRNA:   3'- gGCGGUA--ACCUaaaaaACGGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 524 0.66 0.992229
Target:  5'- uCCGCgGagGGcaag--UGCCCGaCGCGg -3'
miRNA:   3'- -GGCGgUaaCCuaaaaaACGGGC-GCGC- -5'
6686 5' -50.9 NC_001847.1 + 923 0.72 0.868545
Target:  5'- cCCGCCGgcgccgGGAagcccgaGCCCGCGCc -3'
miRNA:   3'- -GGCGGUaa----CCUaaaaaa-CGGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 935 0.67 0.978101
Target:  5'- aCCGCCGcccucg-----GCCCGCGCGc -3'
miRNA:   3'- -GGCGGUaaccuaaaaaaCGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 2087 0.66 0.991076
Target:  5'- gCGCCccgcGGG------GCCCGCGCGg -3'
miRNA:   3'- gGCGGuaa-CCUaaaaaaCGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 3251 0.66 0.986793
Target:  5'- cUCGCCGgcggcaGGGgcgccgGCgCCGCGCGg -3'
miRNA:   3'- -GGCGGUaa----CCUaaaaaaCG-GGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 5720 0.69 0.951377
Target:  5'- gCGCCug-GGAgggcuuaccUGCCCGCGgGg -3'
miRNA:   3'- gGCGGuaaCCUaaaaa----ACGGGCGCgC- -5'
6686 5' -50.9 NC_001847.1 + 6611 0.66 0.992862
Target:  5'- aCCGCUGUUGGAguaaagccGCCgGUagGCGg -3'
miRNA:   3'- -GGCGGUAACCUaaaaaa--CGGgCG--CGC- -5'
6686 5' -50.9 NC_001847.1 + 6990 0.66 0.989792
Target:  5'- uUGCCGgcgUGGGUagUUUGuauaugcacaCCCGCGCc -3'
miRNA:   3'- gGCGGUa--ACCUAaaAAAC----------GGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 7962 0.71 0.905408
Target:  5'- gCGCCAUgcGGGUUUUUaggGCCUGCuCGg -3'
miRNA:   3'- gGCGGUAa-CCUAAAAAa--CGGGCGcGC- -5'
6686 5' -50.9 NC_001847.1 + 8041 0.66 0.990451
Target:  5'- -aGCCcggUGGAcccaaagccgcgcgGCCCGCGCGc -3'
miRNA:   3'- ggCGGua-ACCUaaaaaa--------CGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 8626 0.66 0.992229
Target:  5'- cCCGCCGggGGAgc----GgCCGCuGCGg -3'
miRNA:   3'- -GGCGGUaaCCUaaaaaaCgGGCG-CGC- -5'
6686 5' -50.9 NC_001847.1 + 10728 0.66 0.992229
Target:  5'- gCCGCCAgcgaguuuagGGGggcgggGCCC-CGCGg -3'
miRNA:   3'- -GGCGGUaa--------CCUaaaaaaCGGGcGCGC- -5'
6686 5' -50.9 NC_001847.1 + 11244 0.67 0.981082
Target:  5'- gCCGCCGUUuucgGGAagc-UUGCCgCGgGCGc -3'
miRNA:   3'- -GGCGGUAA----CCUaaaaAACGG-GCgCGC- -5'
6686 5' -50.9 NC_001847.1 + 11979 0.71 0.87763
Target:  5'- gUGCCGUUGGcgggg--GCUCGCGCa -3'
miRNA:   3'- gGCGGUAACCuaaaaaaCGGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 13822 0.68 0.96087
Target:  5'- aCGCgAgcGaGAUcgUUUGCCgCGCGCGg -3'
miRNA:   3'- gGCGgUaaC-CUAaaAAACGG-GCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 15400 0.67 0.976359
Target:  5'- uCCGCCAgcUGGGcg----GCCCuggaGCGCGg -3'
miRNA:   3'- -GGCGGUa-ACCUaaaaaaCGGG----CGCGC- -5'
6686 5' -50.9 NC_001847.1 + 15712 0.66 0.992229
Target:  5'- cCCGCCGUcGGcgUcuaUGCCUcgauGCGCa -3'
miRNA:   3'- -GGCGGUAaCCuaAaaaACGGG----CGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.