miRNA display CGI


Results 21 - 40 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6686 5' -50.9 NC_001847.1 + 125428 0.69 0.948341
Target:  5'- gCCGCCGgaGGA-------CCCGCGCGu -3'
miRNA:   3'- -GGCGGUaaCCUaaaaaacGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 125071 0.7 0.910485
Target:  5'- gCGCgCGgcGGGgcgcuggGCCCGCGCGg -3'
miRNA:   3'- gGCG-GUaaCCUaaaaaa-CGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 124535 0.67 0.975054
Target:  5'- gCGCCAgcagGGcgcgggccggcgccgGCCCGCGCGc -3'
miRNA:   3'- gGCGGUaa--CCuaaaaaa--------CGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 123438 0.69 0.938492
Target:  5'- gCCGCCGaaUGGGUUUgccgggcuugGCCCG-GCGa -3'
miRNA:   3'- -GGCGGUa-ACCUAAAaaa-------CGGGCgCGC- -5'
6686 5' -50.9 NC_001847.1 + 122914 0.71 0.87763
Target:  5'- cUCGCCGUUcGGGUg---UGCgCGCGCc -3'
miRNA:   3'- -GGCGGUAA-CCUAaaaaACGgGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 121669 0.67 0.98316
Target:  5'- gCCGCCGcugUGGGgugcg-GCCCGaGCa -3'
miRNA:   3'- -GGCGGUa--ACCUaaaaaaCGGGCgCGc -5'
6686 5' -50.9 NC_001847.1 + 121447 0.7 0.928062
Target:  5'- aCCGCCGccGGGUUguuaaauggGUCuCGCGCGg -3'
miRNA:   3'- -GGCGGUaaCCUAAaaaa-----CGG-GCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 120086 0.7 0.926963
Target:  5'- gCCGCgCGgggcgGGAgauaaagcGCCCGCGCGu -3'
miRNA:   3'- -GGCG-GUaa---CCUaaaaaa--CGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 119826 0.66 0.993261
Target:  5'- gCCGCgauCAUguacGGGUcgcgcacGCCCGCGCGc -3'
miRNA:   3'- -GGCG---GUAa---CCUAaaaaa--CGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 119581 0.7 0.911729
Target:  5'- gCCGCCGaUGGGggUUcc-CCCGCGCc -3'
miRNA:   3'- -GGCGGUaACCUaaAAaacGGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 118813 0.66 0.986793
Target:  5'- cUCGCCGUUGcGGUgagcUUGCCuacaccCGCGCc -3'
miRNA:   3'- -GGCGGUAAC-CUAaaa-AACGG------GCGCGc -5'
6686 5' -50.9 NC_001847.1 + 118222 0.66 0.990705
Target:  5'- aCGCaucgcUGGAgugcaacucccGCCCGCGCGa -3'
miRNA:   3'- gGCGgua--ACCUaaaaaa-----CGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 117277 0.7 0.934444
Target:  5'- gCCGCCGUuuUGGGgcgc---CCCGCGCc -3'
miRNA:   3'- -GGCGGUA--ACCUaaaaaacGGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 116902 0.68 0.967734
Target:  5'- gCgGCCAUcuUGGAUcca---CCCGCGCGc -3'
miRNA:   3'- -GgCGGUA--ACCUAaaaaacGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 115899 0.66 0.989792
Target:  5'- gCGCCGcUUGGccg----GCUCGCGCa -3'
miRNA:   3'- gGCGGU-AACCuaaaaaaCGGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 113611 0.76 0.669065
Target:  5'- gUGCCAgcUUGGGcgcguugGCCCGCGCGg -3'
miRNA:   3'- gGCGGU--AACCUaaaaaa-CGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 113541 0.66 0.992229
Target:  5'- gCCGCCAgcgaguuuagGGGggcgggGCCC-CGCGg -3'
miRNA:   3'- -GGCGGUaa--------CCUaaaaaaCGGGcGCGC- -5'
6686 5' -50.9 NC_001847.1 + 109803 0.66 0.989792
Target:  5'- uUGCCGgcgUGGGUagUUUGuauaugcacaCCCGCGCc -3'
miRNA:   3'- gGCGGUa--ACCUAaaAAAC----------GGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 108533 0.69 0.951377
Target:  5'- gCGCCug-GGAgggcuuaccUGCCCGCGgGg -3'
miRNA:   3'- gGCGGuaaCCUaaaaa----ACGGGCGCgC- -5'
6686 5' -50.9 NC_001847.1 + 106064 0.66 0.986793
Target:  5'- cUCGCCGgcggcaGGGgcgccgGCgCCGCGCGg -3'
miRNA:   3'- -GGCGGUaa----CCUaaaaaaCG-GGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.