miRNA display CGI


Results 1 - 20 of 371 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6687 3' -53.4 NC_001847.1 + 110942 0.66 0.94083
Target:  5'- -cGC---GGgGC-GGGCGGGCCGAc- -3'
miRNA:   3'- uaCGuuuUCgCGuUCCGCCCGGUUuc -5'
6687 3' -53.4 NC_001847.1 + 21558 0.66 0.94083
Target:  5'- uAUGaCAAGGGC-CGGGGagaGGGCgGGAGa -3'
miRNA:   3'- -UAC-GUUUUCGcGUUCCg--CCCGgUUUC- -5'
6687 3' -53.4 NC_001847.1 + 5881 0.66 0.94083
Target:  5'- -aGCGcuGcGCGCAGGGCGGccgcGCCGu-- -3'
miRNA:   3'- uaCGUuuU-CGCGUUCCGCC----CGGUuuc -5'
6687 3' -53.4 NC_001847.1 + 8129 0.66 0.94083
Target:  5'- -cGC---GGgGC-GGGCGGGCCGAc- -3'
miRNA:   3'- uaCGuuuUCgCGuUCCGCCCGGUUuc -5'
6687 3' -53.4 NC_001847.1 + 22404 0.66 0.94083
Target:  5'- -cGCGGcGAGCGUgcucguccgcgGGGGCGgGGCCcGAGa -3'
miRNA:   3'- uaCGUU-UUCGCG-----------UUCCGC-CCGGuUUC- -5'
6687 3' -53.4 NC_001847.1 + 125217 0.66 0.94083
Target:  5'- -cGCGGcGAGCGUgcucguccgcgGGGGCGgGGCCcGAGa -3'
miRNA:   3'- uaCGUU-UUCGCG-----------UUCCGC-CCGGuUUC- -5'
6687 3' -53.4 NC_001847.1 + 19077 0.66 0.94083
Target:  5'- cGUGCGAAAGUGCGcccCGGuGCCcGAGg -3'
miRNA:   3'- -UACGUUUUCGCGUuccGCC-CGGuUUC- -5'
6687 3' -53.4 NC_001847.1 + 82454 0.66 0.94083
Target:  5'- -gGCuccAGGCGC--GGCGGGCCc--- -3'
miRNA:   3'- uaCGuu-UUCGCGuuCCGCCCGGuuuc -5'
6687 3' -53.4 NC_001847.1 + 49397 0.66 0.94083
Target:  5'- -gGCcuggguGGCGCGGGGCugacGGCCAAGc -3'
miRNA:   3'- uaCGuuu---UCGCGUUCCGc---CCGGUUUc -5'
6687 3' -53.4 NC_001847.1 + 36847 0.66 0.94083
Target:  5'- -gGCGGAcguGCGCucGGCGGcgGCCGAGc -3'
miRNA:   3'- uaCGUUUu--CGCGuuCCGCC--CGGUUUc -5'
6687 3' -53.4 NC_001847.1 + 124371 0.66 0.94083
Target:  5'- uAUGaCAAGGGC-CGGGGagaGGGCgGGAGa -3'
miRNA:   3'- -UAC-GUUUUCGcGUUCCg--CCCGgUUUC- -5'
6687 3' -53.4 NC_001847.1 + 59246 0.66 0.94083
Target:  5'- -gGCGAuGGCGCc-GGCcaGGGCCAu-- -3'
miRNA:   3'- uaCGUUuUCGCGuuCCG--CCCGGUuuc -5'
6687 3' -53.4 NC_001847.1 + 33499 0.66 0.94083
Target:  5'- -gGCGGcGGCGCGGgcggcGGCGGGCg---- -3'
miRNA:   3'- uaCGUUuUCGCGUU-----CCGCCCGguuuc -5'
6687 3' -53.4 NC_001847.1 + 106631 0.66 0.94083
Target:  5'- -gGCGGcGGCGCGcuGcCGGGCCAc-- -3'
miRNA:   3'- uaCGUUuUCGCGUucC-GCCCGGUuuc -5'
6687 3' -53.4 NC_001847.1 + 53943 0.66 0.94083
Target:  5'- -gGCucuguGCGCGAGGCGGccGCCu--- -3'
miRNA:   3'- uaCGuuuu-CGCGUUCCGCC--CGGuuuc -5'
6687 3' -53.4 NC_001847.1 + 3818 0.66 0.94083
Target:  5'- -gGCGGcGGCGCGcuGcCGGGCCAc-- -3'
miRNA:   3'- uaCGUUuUCGCGUucC-GCCCGGUuuc -5'
6687 3' -53.4 NC_001847.1 + 33693 0.66 0.940339
Target:  5'- -cGCAGGcgcucgcGGCGCGGcGGCGcguGGCCGAGc -3'
miRNA:   3'- uaCGUUU-------UCGCGUU-CCGC---CCGGUUUc -5'
6687 3' -53.4 NC_001847.1 + 81878 0.66 0.940339
Target:  5'- -cGCcuGGGCGCGcagcgccccgccgAGGCGGcGCCGcAGc -3'
miRNA:   3'- uaCGuuUUCGCGU-------------UCCGCC-CGGUuUC- -5'
6687 3' -53.4 NC_001847.1 + 123099 0.66 0.939349
Target:  5'- -cGCAGc-GCGCAGGGCGuccagcgcuccgccGGgCAGAGg -3'
miRNA:   3'- uaCGUUuuCGCGUUCCGC--------------CCgGUUUC- -5'
6687 3' -53.4 NC_001847.1 + 86038 0.66 0.935802
Target:  5'- cUGCGcuGGUuggGCGAGGCgcuggGGGCCAcGGa -3'
miRNA:   3'- uACGUuuUCG---CGUUCCG-----CCCGGUuUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.