miRNA display CGI


Results 1 - 20 of 371 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6687 3' -53.4 NC_001847.1 + 135135 0.66 0.930511
Target:  5'- -cGCAGGGGgccCGCGcGGCGcGGCgCGGAGg -3'
miRNA:   3'- uaCGUUUUC---GCGUuCCGC-CCG-GUUUC- -5'
6687 3' -53.4 NC_001847.1 + 135034 0.69 0.820765
Target:  5'- -gGCcGGGGCGCGGGGCGccGGacCCAGGGg -3'
miRNA:   3'- uaCGuUUUCGCGUUCCGC--CC--GGUUUC- -5'
6687 3' -53.4 NC_001847.1 + 134954 0.7 0.783278
Target:  5'- -gGCGGGGGCG-GGGGCGGGggccCCGGGGg -3'
miRNA:   3'- uaCGUUUUCGCgUUCCGCCC----GGUUUC- -5'
6687 3' -53.4 NC_001847.1 + 134910 0.71 0.69119
Target:  5'- -gGCGucGGGGCGCGAGGCccGGGCUcgGGc -3'
miRNA:   3'- uaCGU--UUUCGCGUUCCG--CCCGGuuUC- -5'
6687 3' -53.4 NC_001847.1 + 134777 0.77 0.369079
Target:  5'- -cGCGGc-GCGCGGGGCGGGCCccGGg -3'
miRNA:   3'- uaCGUUuuCGCGUUCCGCCCGGuuUC- -5'
6687 3' -53.4 NC_001847.1 + 134662 0.7 0.753551
Target:  5'- -cGCGGAGGCGC-GGGCacccaugacGGcGCCGAAGc -3'
miRNA:   3'- uaCGUUUUCGCGuUCCG---------CC-CGGUUUC- -5'
6687 3' -53.4 NC_001847.1 + 134624 0.71 0.712308
Target:  5'- -aGUAGAacAGCGUgggcugGGGGCGGGCCGGc- -3'
miRNA:   3'- uaCGUUU--UCGCG------UUCCGCCCGGUUuc -5'
6687 3' -53.4 NC_001847.1 + 134493 0.68 0.846925
Target:  5'- aGUGCAcgGGUGUAGuGUGGGCCGu-- -3'
miRNA:   3'- -UACGUuuUCGCGUUcCGCCCGGUuuc -5'
6687 3' -53.4 NC_001847.1 + 134456 0.67 0.913051
Target:  5'- uUGCGGcAGgGCAagauggcauAGGCGcGGCCAAc- -3'
miRNA:   3'- uACGUUuUCgCGU---------UCCGC-CCGGUUuc -5'
6687 3' -53.4 NC_001847.1 + 134200 0.73 0.562651
Target:  5'- cGUGgAGcGGCGCGc-GCGGGCCGAGGg -3'
miRNA:   3'- -UACgUUuUCGCGUucCGCCCGGUUUC- -5'
6687 3' -53.4 NC_001847.1 + 134157 0.67 0.886118
Target:  5'- -gGCAGAAgGUGCGu-GCGGGCCGGc- -3'
miRNA:   3'- uaCGUUUU-CGCGUucCGCCCGGUUuc -5'
6687 3' -53.4 NC_001847.1 + 133794 0.68 0.871145
Target:  5'- -cGCAAGGacauggccGCGCAGGGCGcGGCgCuGGGg -3'
miRNA:   3'- uaCGUUUU--------CGCGUUCCGC-CCG-GuUUC- -5'
6687 3' -53.4 NC_001847.1 + 133704 0.74 0.552093
Target:  5'- aAUGCAcccGAGCGCAAauagugccuGGCGGGCgCGGGGc -3'
miRNA:   3'- -UACGUu--UUCGCGUU---------CCGCCCG-GUUUC- -5'
6687 3' -53.4 NC_001847.1 + 133622 0.71 0.701782
Target:  5'- -gGCAcAAGCGCGcgcGGGgggaacacaaCGGGCCAAGGc -3'
miRNA:   3'- uaCGUuUUCGCGU---UCC----------GCCCGGUUUC- -5'
6687 3' -53.4 NC_001847.1 + 133587 0.71 0.722759
Target:  5'- -gGCGcgGGCGCGcuaucgggcGGGCGGGCUuGGGc -3'
miRNA:   3'- uaCGUuuUCGCGU---------UCCGCCCGGuUUC- -5'
6687 3' -53.4 NC_001847.1 + 133173 0.67 0.886118
Target:  5'- -cGgGGAGGCGCu-GGCGGcGCCGc-- -3'
miRNA:   3'- uaCgUUUUCGCGuuCCGCC-CGGUuuc -5'
6687 3' -53.4 NC_001847.1 + 133172 0.68 0.871145
Target:  5'- cUGCuaccuGCGCGGGcGCGGGCUg--- -3'
miRNA:   3'- uACGuuuu-CGCGUUC-CGCCCGGuuuc -5'
6687 3' -53.4 NC_001847.1 + 132633 0.72 0.648384
Target:  5'- -gGCAgcAAAGCGCGAGGCGGcCCu--- -3'
miRNA:   3'- uaCGU--UUUCGCGUUCCGCCcGGuuuc -5'
6687 3' -53.4 NC_001847.1 + 132613 0.74 0.524942
Target:  5'- -gGCGGGAGCGCcgccggguccgagggAAGGaagaaGGGCCGAGGa -3'
miRNA:   3'- uaCGUUUUCGCG---------------UUCCg----CCCGGUUUC- -5'
6687 3' -53.4 NC_001847.1 + 132572 0.66 0.935802
Target:  5'- -gGCGGccGCGC-AGGCGcccgcGCCGAAGa -3'
miRNA:   3'- uaCGUUuuCGCGuUCCGCc----CGGUUUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.