Results 61 - 80 of 371 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6687 | 3' | -53.4 | NC_001847.1 | + | 66490 | 0.66 | 0.930511 |
Target: 5'- -cGCAGGGGCgGgGAGGCggugaaguuuGGGCUGGAGc -3' miRNA: 3'- uaCGUUUUCG-CgUUCCG----------CCCGGUUUC- -5' |
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6687 | 3' | -53.4 | NC_001847.1 | + | 81878 | 0.66 | 0.940339 |
Target: 5'- -cGCcuGGGCGCGcagcgccccgccgAGGCGGcGCCGcAGc -3' miRNA: 3'- uaCGuuUUCGCGU-------------UCCGCC-CGGUuUC- -5' |
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6687 | 3' | -53.4 | NC_001847.1 | + | 33693 | 0.66 | 0.940339 |
Target: 5'- -cGCAGGcgcucgcGGCGCGGcGGCGcguGGCCGAGc -3' miRNA: 3'- uaCGUUU-------UCGCGUU-CCGC---CCGGUUUc -5' |
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6687 | 3' | -53.4 | NC_001847.1 | + | 5881 | 0.66 | 0.94083 |
Target: 5'- -aGCGcuGcGCGCAGGGCGGccgcGCCGu-- -3' miRNA: 3'- uaCGUuuU-CGCGUUCCGCC----CGGUuuc -5' |
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6687 | 3' | -53.4 | NC_001847.1 | + | 86038 | 0.66 | 0.935802 |
Target: 5'- cUGCGcuGGUuggGCGAGGCgcuggGGGCCAcGGa -3' miRNA: 3'- uACGUuuUCG---CGUUCCG-----CCCGGUuUC- -5' |
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6687 | 3' | -53.4 | NC_001847.1 | + | 18728 | 0.66 | 0.930511 |
Target: 5'- -aGCccAAGCGCGcGGCccgGGGcCCAGAGc -3' miRNA: 3'- uaCGuuUUCGCGUuCCG---CCC-GGUUUC- -5' |
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6687 | 3' | -53.4 | NC_001847.1 | + | 39419 | 0.66 | 0.930511 |
Target: 5'- --cCGAAAGCaGCGAGGgGGGCgCGuGGg -3' miRNA: 3'- uacGUUUUCG-CGUUCCgCCCG-GUuUC- -5' |
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6687 | 3' | -53.4 | NC_001847.1 | + | 71518 | 0.66 | 0.919135 |
Target: 5'- -cGCGGAGGCaGUA--GCGGGCgAAGGg -3' miRNA: 3'- uaCGUUUUCG-CGUucCGCCCGgUUUC- -5' |
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6687 | 3' | -53.4 | NC_001847.1 | + | 82093 | 0.66 | 0.918538 |
Target: 5'- -gGCc-AAGCGCGGGGCcaggcucGGaGCCGAGGc -3' miRNA: 3'- uaCGuuUUCGCGUUCCG-------CC-CGGUUUC- -5' |
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6687 | 3' | -53.4 | NC_001847.1 | + | 29435 | 0.66 | 0.935285 |
Target: 5'- -aGCG--AGCGCuGGGGCGuggcgccgcccgcGGCCGAAGc -3' miRNA: 3'- uaCGUuuUCGCG-UUCCGC-------------CCGGUUUC- -5' |
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6687 | 3' | -53.4 | NC_001847.1 | + | 21558 | 0.66 | 0.94083 |
Target: 5'- uAUGaCAAGGGC-CGGGGagaGGGCgGGAGa -3' miRNA: 3'- -UAC-GUUUUCGcGUUCCg--CCCGgUUUC- -5' |
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6687 | 3' | -53.4 | NC_001847.1 | + | 110942 | 0.66 | 0.94083 |
Target: 5'- -cGC---GGgGC-GGGCGGGCCGAc- -3' miRNA: 3'- uaCGuuuUCgCGuUCCGCCCGGUUuc -5' |
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6687 | 3' | -53.4 | NC_001847.1 | + | 82454 | 0.66 | 0.94083 |
Target: 5'- -gGCuccAGGCGC--GGCGGGCCc--- -3' miRNA: 3'- uaCGuu-UUCGCGuuCCGCCCGGuuuc -5' |
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6687 | 3' | -53.4 | NC_001847.1 | + | 22404 | 0.66 | 0.94083 |
Target: 5'- -cGCGGcGAGCGUgcucguccgcgGGGGCGgGGCCcGAGa -3' miRNA: 3'- uaCGUU-UUCGCG-----------UUCCGC-CCGGuUUC- -5' |
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6687 | 3' | -53.4 | NC_001847.1 | + | 34076 | 0.67 | 0.906704 |
Target: 5'- -gGCAcgcGGAGCGCGuGGCGGccGCCGu-- -3' miRNA: 3'- uaCGU---UUUCGCGUuCCGCC--CGGUuuc -5' |
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6687 | 3' | -53.4 | NC_001847.1 | + | 64239 | 0.67 | 0.900098 |
Target: 5'- -gGCGgggGAGGC-CAcGGCGGGCCcuAGg -3' miRNA: 3'- uaCGU---UUUCGcGUuCCGCCCGGuuUC- -5' |
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6687 | 3' | -53.4 | NC_001847.1 | + | 81569 | 0.67 | 0.900098 |
Target: 5'- -cGCAGcuGCGCGGGGCcggcGGCUAcGGg -3' miRNA: 3'- uaCGUUuuCGCGUUCCGc---CCGGUuUC- -5' |
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6687 | 3' | -53.4 | NC_001847.1 | + | 127154 | 0.67 | 0.906704 |
Target: 5'- gAUGUccAAGUGgAGGGgGGGCCcGAGc -3' miRNA: 3'- -UACGuuUUCGCgUUCCgCCCGGuUUC- -5' |
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6687 | 3' | -53.4 | NC_001847.1 | + | 45497 | 0.67 | 0.906704 |
Target: 5'- -aGCAAAcGCcCGGGGCGGGCg---- -3' miRNA: 3'- uaCGUUUuCGcGUUCCGCCCGguuuc -5' |
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6687 | 3' | -53.4 | NC_001847.1 | + | 110129 | 0.67 | 0.906704 |
Target: 5'- uGUGUA--AGUGCAcagagAGGCGGGgCGAAa -3' miRNA: 3'- -UACGUuuUCGCGU-----UCCGCCCgGUUUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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