miRNA display CGI


Results 61 - 80 of 371 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6687 3' -53.4 NC_001847.1 + 66490 0.66 0.930511
Target:  5'- -cGCAGGGGCgGgGAGGCggugaaguuuGGGCUGGAGc -3'
miRNA:   3'- uaCGUUUUCG-CgUUCCG----------CCCGGUUUC- -5'
6687 3' -53.4 NC_001847.1 + 81878 0.66 0.940339
Target:  5'- -cGCcuGGGCGCGcagcgccccgccgAGGCGGcGCCGcAGc -3'
miRNA:   3'- uaCGuuUUCGCGU-------------UCCGCC-CGGUuUC- -5'
6687 3' -53.4 NC_001847.1 + 33693 0.66 0.940339
Target:  5'- -cGCAGGcgcucgcGGCGCGGcGGCGcguGGCCGAGc -3'
miRNA:   3'- uaCGUUU-------UCGCGUU-CCGC---CCGGUUUc -5'
6687 3' -53.4 NC_001847.1 + 5881 0.66 0.94083
Target:  5'- -aGCGcuGcGCGCAGGGCGGccgcGCCGu-- -3'
miRNA:   3'- uaCGUuuU-CGCGUUCCGCC----CGGUuuc -5'
6687 3' -53.4 NC_001847.1 + 86038 0.66 0.935802
Target:  5'- cUGCGcuGGUuggGCGAGGCgcuggGGGCCAcGGa -3'
miRNA:   3'- uACGUuuUCG---CGUUCCG-----CCCGGUuUC- -5'
6687 3' -53.4 NC_001847.1 + 18728 0.66 0.930511
Target:  5'- -aGCccAAGCGCGcGGCccgGGGcCCAGAGc -3'
miRNA:   3'- uaCGuuUUCGCGUuCCG---CCC-GGUUUC- -5'
6687 3' -53.4 NC_001847.1 + 39419 0.66 0.930511
Target:  5'- --cCGAAAGCaGCGAGGgGGGCgCGuGGg -3'
miRNA:   3'- uacGUUUUCG-CGUUCCgCCCG-GUuUC- -5'
6687 3' -53.4 NC_001847.1 + 71518 0.66 0.919135
Target:  5'- -cGCGGAGGCaGUA--GCGGGCgAAGGg -3'
miRNA:   3'- uaCGUUUUCG-CGUucCGCCCGgUUUC- -5'
6687 3' -53.4 NC_001847.1 + 82093 0.66 0.918538
Target:  5'- -gGCc-AAGCGCGGGGCcaggcucGGaGCCGAGGc -3'
miRNA:   3'- uaCGuuUUCGCGUUCCG-------CC-CGGUUUC- -5'
6687 3' -53.4 NC_001847.1 + 29435 0.66 0.935285
Target:  5'- -aGCG--AGCGCuGGGGCGuggcgccgcccgcGGCCGAAGc -3'
miRNA:   3'- uaCGUuuUCGCG-UUCCGC-------------CCGGUUUC- -5'
6687 3' -53.4 NC_001847.1 + 21558 0.66 0.94083
Target:  5'- uAUGaCAAGGGC-CGGGGagaGGGCgGGAGa -3'
miRNA:   3'- -UAC-GUUUUCGcGUUCCg--CCCGgUUUC- -5'
6687 3' -53.4 NC_001847.1 + 110942 0.66 0.94083
Target:  5'- -cGC---GGgGC-GGGCGGGCCGAc- -3'
miRNA:   3'- uaCGuuuUCgCGuUCCGCCCGGUUuc -5'
6687 3' -53.4 NC_001847.1 + 82454 0.66 0.94083
Target:  5'- -gGCuccAGGCGC--GGCGGGCCc--- -3'
miRNA:   3'- uaCGuu-UUCGCGuuCCGCCCGGuuuc -5'
6687 3' -53.4 NC_001847.1 + 22404 0.66 0.94083
Target:  5'- -cGCGGcGAGCGUgcucguccgcgGGGGCGgGGCCcGAGa -3'
miRNA:   3'- uaCGUU-UUCGCG-----------UUCCGC-CCGGuUUC- -5'
6687 3' -53.4 NC_001847.1 + 34076 0.67 0.906704
Target:  5'- -gGCAcgcGGAGCGCGuGGCGGccGCCGu-- -3'
miRNA:   3'- uaCGU---UUUCGCGUuCCGCC--CGGUuuc -5'
6687 3' -53.4 NC_001847.1 + 64239 0.67 0.900098
Target:  5'- -gGCGgggGAGGC-CAcGGCGGGCCcuAGg -3'
miRNA:   3'- uaCGU---UUUCGcGUuCCGCCCGGuuUC- -5'
6687 3' -53.4 NC_001847.1 + 81569 0.67 0.900098
Target:  5'- -cGCAGcuGCGCGGGGCcggcGGCUAcGGg -3'
miRNA:   3'- uaCGUUuuCGCGUUCCGc---CCGGUuUC- -5'
6687 3' -53.4 NC_001847.1 + 127154 0.67 0.906704
Target:  5'- gAUGUccAAGUGgAGGGgGGGCCcGAGc -3'
miRNA:   3'- -UACGuuUUCGCgUUCCgCCCGGuUUC- -5'
6687 3' -53.4 NC_001847.1 + 45497 0.67 0.906704
Target:  5'- -aGCAAAcGCcCGGGGCGGGCg---- -3'
miRNA:   3'- uaCGUUUuCGcGUUCCGCCCGguuuc -5'
6687 3' -53.4 NC_001847.1 + 110129 0.67 0.906704
Target:  5'- uGUGUA--AGUGCAcagagAGGCGGGgCGAAa -3'
miRNA:   3'- -UACGUuuUCGCGU-----UCCGCCCgGUUUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.