miRNA display CGI


Results 81 - 100 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6687 3' -53.4 NC_001847.1 + 135034 0.69 0.820765
Target:  5'- -gGCcGGGGCGCGGGGCGccGGacCCAGGGg -3'
miRNA:   3'- uaCGuUUUCGCGUUCCGC--CC--GGUUUC- -5'
6687 3' -53.4 NC_001847.1 + 60497 0.69 0.820765
Target:  5'- uGUGCGc--GCGCGGgccGGCGGGCCu--- -3'
miRNA:   3'- -UACGUuuuCGCGUU---CCGCCCGGuuuc -5'
6687 3' -53.4 NC_001847.1 + 97217 0.69 0.820765
Target:  5'- -cGCcGGGGCGCGAGuCGGGaCCAAGc -3'
miRNA:   3'- uaCGuUUUCGCGUUCcGCCC-GGUUUc -5'
6687 3' -53.4 NC_001847.1 + 107813 0.69 0.820765
Target:  5'- -cGCGgcAAAGCGCGGcggcGGCGGcGCgGAGGg -3'
miRNA:   3'- uaCGU--UUUCGCGUU----CCGCC-CGgUUUC- -5'
6687 3' -53.4 NC_001847.1 + 132380 0.69 0.824357
Target:  5'- -gGCGGGGGCGCcGGcGCcggcgccgccgcgccGGGCCGGGGg -3'
miRNA:   3'- uaCGUUUUCGCGuUC-CG---------------CCCGGUUUC- -5'
6687 3' -53.4 NC_001847.1 + 36180 0.69 0.829687
Target:  5'- uUGCGGcGGUGCGcGGCGaGGCCGcguacGAGg -3'
miRNA:   3'- uACGUUuUCGCGUuCCGC-CCGGU-----UUC- -5'
6687 3' -53.4 NC_001847.1 + 116055 0.68 0.83841
Target:  5'- -aGCGAAAGCGgGAGcgaaaGCGgGGCCGAc- -3'
miRNA:   3'- uaCGUUUUCGCgUUC-----CGC-CCGGUUuc -5'
6687 3' -53.4 NC_001847.1 + 126084 0.68 0.83841
Target:  5'- cUGCAAugGAGCGCugcacGGGgGGGCgGAGc -3'
miRNA:   3'- uACGUU--UUCGCGu----UCCgCCCGgUUUc -5'
6687 3' -53.4 NC_001847.1 + 83049 0.68 0.83841
Target:  5'- aGUGCGcuuGGGC-CGcGGCGcGGCCGAAGa -3'
miRNA:   3'- -UACGUu--UUCGcGUuCCGC-CCGGUUUC- -5'
6687 3' -53.4 NC_001847.1 + 58831 0.68 0.846925
Target:  5'- gGUGCGAGGGUcgGCAcuuGGGcCGGGCCc--- -3'
miRNA:   3'- -UACGUUUUCG--CGU---UCC-GCCCGGuuuc -5'
6687 3' -53.4 NC_001847.1 + 62801 0.68 0.846925
Target:  5'- -gGCGAGAucGCGCAcaAGcCGGGCCGAGu -3'
miRNA:   3'- uaCGUUUU--CGCGU--UCcGCCCGGUUUc -5'
6687 3' -53.4 NC_001847.1 + 93649 0.68 0.846925
Target:  5'- cUGCAcgcucggucauGGAGCGCGAGGCcuuuucaGCCGAGGu -3'
miRNA:   3'- uACGU-----------UUUCGCGUUCCGcc-----CGGUUUC- -5'
6687 3' -53.4 NC_001847.1 + 77253 0.68 0.846925
Target:  5'- -cGCGcgGGCGCu-GGCGGGCg---- -3'
miRNA:   3'- uaCGUuuUCGCGuuCCGCCCGguuuc -5'
6687 3' -53.4 NC_001847.1 + 82586 0.68 0.846925
Target:  5'- cGUGCGcGAAGCGCucgcGGCGGcGCCu--- -3'
miRNA:   3'- -UACGU-UUUCGCGuu--CCGCC-CGGuuuc -5'
6687 3' -53.4 NC_001847.1 + 102872 0.68 0.846925
Target:  5'- -gGCGGAaauuucGGCGC--GGCGGGCCcGGGc -3'
miRNA:   3'- uaCGUUU------UCGCGuuCCGCCCGGuUUC- -5'
6687 3' -53.4 NC_001847.1 + 32050 0.68 0.846925
Target:  5'- -cGCGAAagguccggGGCGCGGagacGGCggGGGCCGGGGa -3'
miRNA:   3'- uaCGUUU--------UCGCGUU----CCG--CCCGGUUUC- -5'
6687 3' -53.4 NC_001847.1 + 92732 0.68 0.846925
Target:  5'- cGUGCucgcgcAGCGCGuGGCaGGCCAGGa -3'
miRNA:   3'- -UACGuuu---UCGCGUuCCGcCCGGUUUc -5'
6687 3' -53.4 NC_001847.1 + 58491 0.68 0.850271
Target:  5'- aAUGCAAAauauacauuuauuguGGCGCGGGGCGc-CCGAGGu -3'
miRNA:   3'- -UACGUUU---------------UCGCGUUCCGCccGGUUUC- -5'
6687 3' -53.4 NC_001847.1 + 26340 0.68 0.852757
Target:  5'- -cGCGAAggcGGCGUAcaugcagcucucccGGGUGGGCCGc-- -3'
miRNA:   3'- uaCGUUU---UCGCGU--------------UCCGCCCGGUuuc -5'
6687 3' -53.4 NC_001847.1 + 19884 0.68 0.855224
Target:  5'- -gGC---GGCGCu-GGCGGGCgCGAGGu -3'
miRNA:   3'- uaCGuuuUCGCGuuCCGCCCG-GUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.