miRNA display CGI


Results 101 - 120 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6687 3' -53.4 NC_001847.1 + 43128 0.67 0.913051
Target:  5'- -cGCAGAcGGCGCGGGcccGCGGGCg---- -3'
miRNA:   3'- uaCGUUU-UCGCGUUC---CGCCCGguuuc -5'
6687 3' -53.4 NC_001847.1 + 51109 0.67 0.913051
Target:  5'- --uCAAGAuGCGCGAGGCGcuguacgaGGCCAAc- -3'
miRNA:   3'- uacGUUUU-CGCGUUCCGC--------CCGGUUuc -5'
6687 3' -53.4 NC_001847.1 + 119729 0.67 0.913051
Target:  5'- --aCGGAGGCGCcgAGGGCGaGCCGAAa -3'
miRNA:   3'- uacGUUUUCGCG--UUCCGCcCGGUUUc -5'
6687 3' -53.4 NC_001847.1 + 54548 0.67 0.913051
Target:  5'- -cGCAGAcGGCG-GGGGCGGcGCgGAGGa -3'
miRNA:   3'- uaCGUUU-UCGCgUUCCGCC-CGgUUUC- -5'
6687 3' -53.4 NC_001847.1 + 70369 0.67 0.913051
Target:  5'- -aGCGAGggGGCGcCGGGGCGcgagcucgcgcuGGCCAAGa -3'
miRNA:   3'- uaCGUUU--UCGC-GUUCCGC------------CCGGUUUc -5'
6687 3' -53.4 NC_001847.1 + 12494 0.67 0.913051
Target:  5'- -gGCGGGGGCGgcCAAGaaccCGGGCCAGAc -3'
miRNA:   3'- uaCGUUUUCGC--GUUCc---GCCCGGUUUc -5'
6687 3' -53.4 NC_001847.1 + 29201 0.67 0.913051
Target:  5'- uUGCuGGGGCuGCccgacGGCGGGCUGGAGc -3'
miRNA:   3'- uACGuUUUCG-CGuu---CCGCCCGGUUUC- -5'
6687 3' -53.4 NC_001847.1 + 55144 0.67 0.913051
Target:  5'- -cGCGcgGGCGCGGGGCGucaccGCCGc-- -3'
miRNA:   3'- uaCGUuuUCGCGUUCCGCc----CGGUuuc -5'
6687 3' -53.4 NC_001847.1 + 125813 0.67 0.913051
Target:  5'- -nGCGGgcGUGCAgcucaaagcGGGuCGGGCCGAGu -3'
miRNA:   3'- uaCGUUuuCGCGU---------UCC-GCCCGGUUUc -5'
6687 3' -53.4 NC_001847.1 + 53833 0.67 0.913051
Target:  5'- -aGCGGGGGCGCugaagagccGGCgcggGGGUCAGGGg -3'
miRNA:   3'- uaCGUUUUCGCGuu-------CCG----CCCGGUUUC- -5'
6687 3' -53.4 NC_001847.1 + 134456 0.67 0.913051
Target:  5'- uUGCGGcAGgGCAagauggcauAGGCGcGGCCAAc- -3'
miRNA:   3'- uACGUUuUCgCGU---------UCCGC-CCGGUUuc -5'
6687 3' -53.4 NC_001847.1 + 93820 0.67 0.912428
Target:  5'- -aGCGAGAGCuCGAaccggccGGCGGcGCCGGAa -3'
miRNA:   3'- uaCGUUUUCGcGUU-------CCGCC-CGGUUUc -5'
6687 3' -53.4 NC_001847.1 + 61777 0.67 0.906704
Target:  5'- --aCGGuGGCGCGgugcGGGUGGGCCGGGu -3'
miRNA:   3'- uacGUUuUCGCGU----UCCGCCCGGUUUc -5'
6687 3' -53.4 NC_001847.1 + 87909 0.67 0.878753
Target:  5'- uUGCAcAGGgGCGGGGCgugGGGCUggGc -3'
miRNA:   3'- uACGUuUUCgCGUUCCG---CCCGGuuUc -5'
6687 3' -53.4 NC_001847.1 + 19904 0.67 0.878753
Target:  5'- -nGUAGAAGCGCAcgaGGGCGucgccGCCGAc- -3'
miRNA:   3'- uaCGUUUUCGCGU---UCCGCc----CGGUUuc -5'
6687 3' -53.4 NC_001847.1 + 9041 0.67 0.878753
Target:  5'- -cGCGAugcGGCGCGAGG-GGGCaauGGa -3'
miRNA:   3'- uaCGUUu--UCGCGUUCCgCCCGguuUC- -5'
6687 3' -53.4 NC_001847.1 + 106786 0.67 0.878753
Target:  5'- -cGCGAGGGCGCc-GG-GGGCCcGGGc -3'
miRNA:   3'- uaCGUUUUCGCGuuCCgCCCGGuUUC- -5'
6687 3' -53.4 NC_001847.1 + 60031 0.67 0.883934
Target:  5'- cGUGCcGucggccucuucgucGGGCGCGAGGCGGcGCgaAGAGa -3'
miRNA:   3'- -UACGuU--------------UUCGCGUUCCGCC-CGg-UUUC- -5'
6687 3' -53.4 NC_001847.1 + 27720 0.67 0.886118
Target:  5'- -gGCAAGGGCGuCAGcGGCGGaaGCCGcGGc -3'
miRNA:   3'- uaCGUUUUCGC-GUU-CCGCC--CGGUuUC- -5'
6687 3' -53.4 NC_001847.1 + 34407 0.67 0.886118
Target:  5'- -gGCAGAcgcGGCGCuGGGgGcGGCgGAAGa -3'
miRNA:   3'- uaCGUUU---UCGCGuUCCgC-CCGgUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.