Results 21 - 40 of 182 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6687 | 5' | -60.5 | NC_001847.1 | + | 105225 | 0.66 | 0.701574 |
Target: 5'- uCgUCCUCCCCCGagggGCcCCCCGCg---- -3' miRNA: 3'- -GgGGGGGGGGGU----UGaGGGGCGaaaac -5' |
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6687 | 5' | -60.5 | NC_001847.1 | + | 63728 | 0.66 | 0.701574 |
Target: 5'- aCCCUCCCCCCGGCcgagcaacagCgCCGCc---- -3' miRNA: 3'- gGGGGGGGGGGUUGa---------GgGGCGaaaac -5' |
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6687 | 5' | -60.5 | NC_001847.1 | + | 4940 | 0.66 | 0.701574 |
Target: 5'- gCgCCCCCCCgAGCaaCCUCGCUa--- -3' miRNA: 3'- gGgGGGGGGGgUUGa-GGGGCGAaaac -5' |
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6687 | 5' | -60.5 | NC_001847.1 | + | 22004 | 0.66 | 0.701574 |
Target: 5'- uCCUCCCCCUCCucguccgcCUCCUCGUc---- -3' miRNA: 3'- -GGGGGGGGGGGuu------GAGGGGCGaaaac -5' |
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6687 | 5' | -60.5 | NC_001847.1 | + | 2412 | 0.66 | 0.701574 |
Target: 5'- uCgUCCUCCCCCGagggGCcCCCCGCg---- -3' miRNA: 3'- -GgGGGGGGGGGU----UGaGGGGCGaaaac -5' |
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6687 | 5' | -60.5 | NC_001847.1 | + | 92531 | 0.66 | 0.700597 |
Target: 5'- gCCCCCCUCCgCGGCggcgccgUCCCUGUc---- -3' miRNA: 3'- -GGGGGGGGGgGUUG-------AGGGGCGaaaac -5' |
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6687 | 5' | -60.5 | NC_001847.1 | + | 11123 | 0.66 | 0.691781 |
Target: 5'- cCCUCCCUCCCCucCUUCCC-CUc--- -3' miRNA: 3'- -GGGGGGGGGGGuuGAGGGGcGAaaac -5' |
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6687 | 5' | -60.5 | NC_001847.1 | + | 11087 | 0.66 | 0.691781 |
Target: 5'- cCCUCCCUCCCCucCUUCCC-CUc--- -3' miRNA: 3'- -GGGGGGGGGGGuuGAGGGGcGAaaac -5' |
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6687 | 5' | -60.5 | NC_001847.1 | + | 134304 | 0.66 | 0.691781 |
Target: 5'- uCCUCCUCCUCCucCUCCUCGUc---- -3' miRNA: 3'- -GGGGGGGGGGGuuGAGGGGCGaaaac -5' |
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6687 | 5' | -60.5 | NC_001847.1 | + | 113792 | 0.66 | 0.691781 |
Target: 5'- cCCUCCCUCCCCucCUUCCC-CUc--- -3' miRNA: 3'- -GGGGGGGGGGGuuGAGGGGcGAaaac -5' |
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6687 | 5' | -60.5 | NC_001847.1 | + | 109768 | 0.66 | 0.691781 |
Target: 5'- uCCCCCUCCgCCCGccgccGCcCCCUGCc---- -3' miRNA: 3'- -GGGGGGGG-GGGU-----UGaGGGGCGaaaac -5' |
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6687 | 5' | -60.5 | NC_001847.1 | + | 113828 | 0.66 | 0.691781 |
Target: 5'- cCCUCCCUCCCCucCUUCCC-CUc--- -3' miRNA: 3'- -GGGGGGGGGGGuuGAGGGGcGAaaac -5' |
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6687 | 5' | -60.5 | NC_001847.1 | + | 113864 | 0.66 | 0.691781 |
Target: 5'- cCCUCCCUCCCCucCUUCCC-CUc--- -3' miRNA: 3'- -GGGGGGGGGGGuuGAGGGGcGAaaac -5' |
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6687 | 5' | -60.5 | NC_001847.1 | + | 113900 | 0.66 | 0.691781 |
Target: 5'- cCCUCCCUCCCCucCUUCCC-CUc--- -3' miRNA: 3'- -GGGGGGGGGGGuuGAGGGGcGAaaac -5' |
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6687 | 5' | -60.5 | NC_001847.1 | + | 113936 | 0.66 | 0.691781 |
Target: 5'- cCCUCCCUCCCCucCUUCCC-CUc--- -3' miRNA: 3'- -GGGGGGGGGGGuuGAGGGGcGAaaac -5' |
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6687 | 5' | -60.5 | NC_001847.1 | + | 113972 | 0.66 | 0.691781 |
Target: 5'- cCCUCCCUCCCCucCUUCCC-CUc--- -3' miRNA: 3'- -GGGGGGGGGGGuuGAGGGGcGAaaac -5' |
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6687 | 5' | -60.5 | NC_001847.1 | + | 126663 | 0.66 | 0.691781 |
Target: 5'- gCCCCgCCCCCGGCcgagCgCCGCc---- -3' miRNA: 3'- gGGGGgGGGGGUUGa---GgGGCGaaaac -5' |
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6687 | 5' | -60.5 | NC_001847.1 | + | 11159 | 0.66 | 0.691781 |
Target: 5'- cCCUCCCUCCCCucCUUCCC-CUc--- -3' miRNA: 3'- -GGGGGGGGGGGuuGAGGGGcGAaaac -5' |
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6687 | 5' | -60.5 | NC_001847.1 | + | 23850 | 0.66 | 0.691781 |
Target: 5'- gCCCCgCCCCCGGCcgagCgCCGCc---- -3' miRNA: 3'- gGGGGgGGGGGUUGa---GgGGCGaaaac -5' |
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6687 | 5' | -60.5 | NC_001847.1 | + | 92142 | 0.66 | 0.691781 |
Target: 5'- gCCCggcgcgCCCCCCCGGCggcguUCCCgGCguugUUGc -3' miRNA: 3'- gGGG------GGGGGGGUUG-----AGGGgCGaa--AAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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