miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6687 5' -60.5 NC_001847.1 + 100492 0.66 0.720985
Target:  5'- gCCgCCCCCUCGGCgCgCCGCUc--- -3'
miRNA:   3'- gGGgGGGGGGGUUGaGgGGCGAaaac -5'
6687 5' -60.5 NC_001847.1 + 118529 0.67 0.622363
Target:  5'- gCgCCCCCCCCCAAagaCCaCGCa---- -3'
miRNA:   3'- -GgGGGGGGGGGUUgagGG-GCGaaaac -5'
6687 5' -60.5 NC_001847.1 + 51193 0.67 0.632318
Target:  5'- gUCUCCgCCCCCGGC-CCCgCGCg---- -3'
miRNA:   3'- -GGGGGgGGGGGUUGaGGG-GCGaaaac -5'
6687 5' -60.5 NC_001847.1 + 31491 0.66 0.691781
Target:  5'- uCCUCCUCCUCCucCUCCUCGUc---- -3'
miRNA:   3'- -GGGGGGGGGGGuuGAGGGGCGaaaac -5'
6687 5' -60.5 NC_001847.1 + 23850 0.66 0.691781
Target:  5'- gCCCCgCCCCCGGCcgagCgCCGCc---- -3'
miRNA:   3'- gGGGGgGGGGGUUGa---GgGGCGaaaac -5'
6687 5' -60.5 NC_001847.1 + 135077 0.68 0.572829
Target:  5'- aUCCCCCaCCCC-GC-CCCCGCc---- -3'
miRNA:   3'- gGGGGGG-GGGGuUGaGGGGCGaaaac -5'
6687 5' -60.5 NC_001847.1 + 8913 0.67 0.612415
Target:  5'- aCCCCggacgCCCCgCCGACgaCCCCGCcaagUGa -3'
miRNA:   3'- -GGGG-----GGGGgGGUUGa-GGGGCGaaa-AC- -5'
6687 5' -60.5 NC_001847.1 + 22004 0.66 0.701574
Target:  5'- uCCUCCCCCUCCucguccgcCUCCUCGUc---- -3'
miRNA:   3'- -GGGGGGGGGGGuu------GAGGGGCGaaaac -5'
6687 5' -60.5 NC_001847.1 + 9544 0.67 0.662153
Target:  5'- gCCCCCCaUCCCCAuCcCCCCGa----- -3'
miRNA:   3'- -GGGGGG-GGGGGUuGaGGGGCgaaaac -5'
6687 5' -60.5 NC_001847.1 + 117084 0.66 0.670083
Target:  5'- cCCUCCCCguCCCCAACcgagacggaaagCUCCGCUg--- -3'
miRNA:   3'- -GGGGGGG--GGGGUUGa-----------GGGGCGAaaac -5'
6687 5' -60.5 NC_001847.1 + 36406 0.66 0.711312
Target:  5'- cCCCggCCCCggCCCCGGC-CCCgGCUUc-- -3'
miRNA:   3'- -GGG--GGGG--GGGGUUGaGGGgCGAAaac -5'
6687 5' -60.5 NC_001847.1 + 40239 0.66 0.711312
Target:  5'- aCCCCCagCCCCGGCUggCCCGUg---- -3'
miRNA:   3'- gGGGGGg-GGGGUUGAg-GGGCGaaaac -5'
6687 5' -60.5 NC_001847.1 + 27055 0.68 0.563016
Target:  5'- aCCCCCgUCCCCGGgUCUCCGg----- -3'
miRNA:   3'- -GGGGGgGGGGGUUgAGGGGCgaaaac -5'
6687 5' -60.5 NC_001847.1 + 129898 0.68 0.572829
Target:  5'- gCCCCCUCCCCCG-CggagaCCUGCa---- -3'
miRNA:   3'- -GGGGGGGGGGGUuGag---GGGCGaaaac -5'
6687 5' -60.5 NC_001847.1 + 80687 0.67 0.632318
Target:  5'- cCCUCCUCCUCgGGCucgUCCCCGCc---- -3'
miRNA:   3'- -GGGGGGGGGGgUUG---AGGGGCGaaaac -5'
6687 5' -60.5 NC_001847.1 + 11087 0.66 0.691781
Target:  5'- cCCUCCCUCCCCucCUUCCC-CUc--- -3'
miRNA:   3'- -GGGGGGGGGGGuuGAGGGGcGAaaac -5'
6687 5' -60.5 NC_001847.1 + 11159 0.66 0.691781
Target:  5'- cCCUCCCUCCCCucCUUCCC-CUc--- -3'
miRNA:   3'- -GGGGGGGGGGGuuGAGGGGcGAaaac -5'
6687 5' -60.5 NC_001847.1 + 100 0.66 0.720985
Target:  5'- uCCgCCCCUgggUCCGGCgCCCCGCg---- -3'
miRNA:   3'- -GGgGGGGG---GGGUUGaGGGGCGaaaac -5'
6687 5' -60.5 NC_001847.1 + 20230 0.66 0.672063
Target:  5'- gCCCCCgUgCCCCAgggGCUcgcCCCCGCg---- -3'
miRNA:   3'- -GGGGG-GgGGGGU---UGA---GGGGCGaaaac -5'
6687 5' -60.5 NC_001847.1 + 82178 0.67 0.661161
Target:  5'- uUCCCCCCCCCCuucACggCCaaagacgCCGCg---- -3'
miRNA:   3'- -GGGGGGGGGGGu--UGa-GG-------GGCGaaaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.